PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn049881
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 357aa    MW: 38726.6 Da    PI: 7.3273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn049881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.1e-13108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
       Achn049881 108 PWTEEEHRLFLIGLQKLGKGDWRGISRSYVTSRTPTQVASHAQKY 152
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.1E-4228IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.137101157IPR017930Myb domain
SuperFamilySSF466895.91E-17103158IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17104155IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-10105151IPR009057Homeodomain-like
SMARTSM007172.5E-9105155IPR001005SANT/Myb domain
PfamPF002492.7E-10108152IPR001005SANT/Myb domain
CDDcd001671.53E-8108153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPS RGGGGGNCVK LFGVRLTDGS IIKKSASMGN LSAHYHSSSS  60
AAASPNPSSP SSDPIRDPIL VPDGYLSDDP GHATCSTNRR LERKKGVPWT EEEHRLFLIG  120
LQKLGKGDWR GISRSYVTSR TPTQVASHAQ KYFIRHSNAT RRKRRSSLFD MVPEMYYVVC  180
QGTDQPTVPE DQFMLPPSQA VDSDTINSLP SLKLSLSQEF EPMEATSDEK VEEPKEIATL  240
LGEIPASVPV FSAFLPVPFA LWPSNTAPTP EEEKVAETFH HQVLRPTPVI PKEPVNVDQL  300
VGMSKLNLGE AEMSHVEPSL SLNLLGAPSR PSAFQASTPA NKSDISEGKS NVIQGV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028087853.11e-156transcription factor MYBS3-like
SwissprotQ7XC578e-95MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2R6QK140.0A0A2R6QK14_ACTCH; Transcription factor MYB1R1 like
STRINGevm.model.supercontig_2092.11e-154(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-93MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]