PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn049431

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 447aa MW: 51266.3 Da PI: 6.4047

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn049431	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77	2.9e-24	120	216	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ +++++++ ++d + Achn049431 120 KWTDKMVRLLITAVSYIGEDVAAEHgngtrrknanlQKKGKWKSVSKVMAERGHCVSPQQCEDKFNDLNKRYKRLNEILGRGtSCQVVERPELLDIM 216 7************999999975445666777888********************************************558888888877766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-23	118	242	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNLSSGNM IPGGGSYGGI DLQGSMRVHH QQQPLSLHQQ HHSLPRQGLM VHPSIHEKFP 60 LTMSSMQDCD QGFSLADFPK GERGKNSASD EDEPSFTEDA VEGHNDVNGG KKGIPWQRVK 120 WTDKMVRLLI TAVSYIGEDV AAEHGNGTRR KNANLQKKGK WKSVSKVMAE RGHCVSPQQC 180 EDKFNDLNKR YKRLNEILGR GTSCQVVERP ELLDIMDVSE KGKDEVRKIL SSKHLFYEEM 240 CSYHNGNRLH LPPDPELQRS LRLALRSRGD HENNDVRRHP QDDLDEDDQD AETDDRDEFE 300 ENHVLHGDHR AIYGVHGGSA KRMKQCQGHE DVGLGNSLNS LDCNKTIVSH PQNAQGDMNQ 360 VLPEGEKANL FQEQWMKHRS LQLEEQKLQI QAQMLELEKE RFNWQRFCKK KDRELEMMRM 420 ENERMKLENE RMALELKQKE MEADHN*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNLSSGNM IPGGGSYGGI DLQGSMRVHH QQQPLSLHQQ HHSLPRQGLM VHPSIHEKFP  60
LTMSSMQDCD QGFSLADFPK GERGKNSASD EDEPSFTEDA VEGHNDVNGG KKGIPWQRVK  120
WTDKMVRLLI TAVSYIGEDV AAEHGNGTRR KNANLQKKGK WKSVSKVMAE RGHCVSPQQC  180
EDKFNDLNKR YKRLNEILGR GTSCQVVERP ELLDIMDVSE KGKDEVRKIL SSKHLFYEEM  240
CSYHNGNRLH LPPDPELQRS LRLALRSRGD HENNDVRRHP QDDLDEDDQD AETDDRDEFE  300
ENHVLHGDHR AIYGVHGGSA KRMKQCQGHE DVGLGNSLNS LDCNKTIVSH PQNAQGDMNQ  360
VLPEGEKANL FQEQWMKHRS LQLEEQKLQI QAQMLELEKE RFNWQRFCKK KDRELEMMRM  420
ENERMKLENE RMALELKQKE MEADHN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028090983.1	0.0	uncharacterized protein LOC114291136
TrEMBL	A0A2R6QYL3	0.0	A0A2R6QYL3_ACTCH; Trihelix transcription factor GT-4 like
STRING	XP_006434454.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-138	sequence-specific DNA binding transcription factors