PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn049361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 333aa MW: 38717.1 Da PI: 6.5831 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 195 | 217 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + +rk++L+rH+r++ Achn049361 195 YFCEFCLTFMKRKEQLQRHMRKC 217 78*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54160 | 2.29E-26 | 46 | 162 | IPR016197 | Chromo domain-like |
Gene3D | G3DSA:2.30.30.270 | 5.8E-38 | 48 | 122 | No hit | No description |
Pfam | PF11717 | 2.2E-21 | 54 | 110 | IPR025995 | RNA binding activity-knot of a chromodomain |
CDD | cd00024 | 7.23E-8 | 67 | 111 | No hit | No description |
SMART | SM00298 | 1.5E-5 | 68 | 125 | IPR000953 | Chromo/chromo shadow domain |
Gene3D | G3DSA:2.30.30.270 | 5.8E-38 | 156 | 206 | No hit | No description |
PROSITE profile | PS51726 | 40.899 | 161 | 332 | IPR002717 | Histone acetyltransferase domain, MYST-type |
SuperFamily | SSF55729 | 7.95E-53 | 162 | 294 | IPR016181 | Acyl-CoA N-acyltransferase |
Gene3D | G3DSA:3.40.630.30 | 1.9E-34 | 220 | 294 | IPR016181 | Acyl-CoA N-acyltransferase |
Pfam | PF01853 | 2.9E-33 | 222 | 293 | IPR002717 | Histone acetyltransferase domain, MYST-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGSIDAPTSK EKGSTLSSGV AQNQPAGDVP SPPPADSGTE NDTSRKRKSS ALPLEVGTRV 60 MCRWRDGKFH QVKVIERRRT QNGDDYEYYV HYTEFNRRLD EWVKLEQLDL DSVETVIDEK 120 VEEKVTSLKM TRHQKRKIDE THVEGHEELD AASLREHEEF TKVKNIATIE LGRYEIETWY 180 FSPFPPEYND SLKMYFCEFC LTFMKRKEQL QRHMRKCDLK HPPGDEIYRS GTLSMFEVDG 240 KKNKVYGQNL CYLAKLFLDH KTLYYDVDLF LFYVLCECDD RGCHMVGYFS KSYRGEPQIS 300 ALIPEFGSKL PRICGIIFIV QIHFMGERIV QL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gk9_A | 1e-58 | 166 | 291 | 2 | 127 | Histone acetyltransferase KAT7 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 48 | SRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone acetyltransferase which may be involved in transcriptional activation. Acetylates 'Lys-5' of histone H4 (H4K5ac) (PubMed:17877703, PubMed:19040736, PubMed:22170978, PubMed:23273925). Essential for gametophyte development (PubMed:19040736). Involved in DNA repair after UV-B exposure (PubMed:22170978). Negative regulator of flowering controlling the H4K5ac levels in the FLC chromatin (PubMed:23273925). {ECO:0000269|PubMed:17877703, ECO:0000269|PubMed:19040736, ECO:0000269|PubMed:22170978, ECO:0000269|PubMed:23273925}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated upon UV-B exposure. {ECO:0000269|PubMed:22170978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028106659.1 | 0.0 | histone acetyltransferase of the MYST family 1-like | ||||
Swissprot | Q9FLF7 | 1e-173 | MYST1_ARATH; Histone acetyltransferase of the MYST family 1 | ||||
TrEMBL | A0A0D2UT38 | 0.0 | A0A0D2UT38_GOSRA; Histone acetyltransferase | ||||
STRING | Gorai.009G242400.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4391 | 3 | 3 |