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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn049331 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | BBR-BPC | ||||||||
| Protein Properties | Length: 388aa MW: 42879.9 Da PI: 9.6688 | ||||||||
| Description | BBR-BPC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GAGA_bind | 364.8 | 1.6e-111 | 79 | 387 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92
mdd+g+re r+k+ ++ ++ +s+k q+m+++aerda+i+ernla+sekk a+aerdma lq d+a+aern a++erdn++++l+++ens++
Achn049331 79 MDDSGNREngRHKPtqgqWFMQHqPSMK-----QIMAIMAERDAAIQERNLAISEKKTAMAERDMAILQCDSAIAERNSAIMERDNAIATLQYRENSMN 172
8999887778887632233445546666.....****************************************************************99 PP
GAGA_bind 93 ....salpvgvqvlsgtksidslqq...lsepqledsavelreeeklealpieeaaeeakekkkkkk..rqrakkpkekkakkkkkksekskkkvkkes 182
s +p+g+q+++g+k++++ qq +++p++++ ++ r+ +++e p++ a e + +++k+ +++a +p +k +k+ kk ++++ ++ +k+
Achn049331 173 sgnmSPCPPGCQISRGVKHMHQPQQqhgHHHPHMSEASYTSRDIHTSEPIPMSPVAAEPAKPRRTKRmnEANAVTPNKKPSKSSKKVKREPADDLNKQV 271
999889****************998443455*********99999999888776555555444444300333444555555555665555655555555 PP
GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsn 281
sk+++k+ dl+ln+v++Des +PvPvCsCtG r CYkWGnGGWqS+CCttt+S+yPLP+++++r+aRi+grKmS++af+kl+++LaaeGydlsn
Achn049331 272 --GVSKSDWKDKDLGLNEVAFDES-MPVPVCSCTGNVRPCYKWGNGGWQSSCCTTTMSMYPLPAVPNKRHARIGGRKMSGSAFNKLISRLAAEGYDLSN 367
..569*****************97.9************************************************************************* PP
GAGA_bind 282 pvDLkdhWAkHGtnkfvtir 301
pvDLkd WAkHGtn+++ti+
Achn049331 368 PVDLKDNWAKHGTNRYITIK 387
*******************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM01226 | 5.1E-158 | 79 | 387 | IPR010409 | GAGA-binding transcriptional activator |
| Pfam | PF06217 | 3.5E-99 | 79 | 387 | IPR010409 | GAGA-binding transcriptional activator |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 388 aa Download sequence Send to blast |
MRVQTIQFTP ITSGEAHRFA AILLKHASTG LGLLVFEAYF CSVSAFAALL RHGQLNSARV 60 EVCKLKLVST VTPNCGPEMD DSGNRENGRH KPTQGQWFMQ HQPSMKQIMA IMAERDAAIQ 120 ERNLAISEKK TAMAERDMAI LQCDSAIAER NSAIMERDNA IATLQYRENS MNSGNMSPCP 180 PGCQISRGVK HMHQPQQQHG HHHPHMSEAS YTSRDIHTSE PIPMSPVAAE PAKPRRTKRM 240 NEANAVTPNK KPSKSSKKVK REPADDLNKQ VGVSKSDWKD KDLGLNEVAF DESMPVPVCS 300 CTGNVRPCYK WGNGGWQSSC CTTTMSMYPL PAVPNKRHAR IGGRKMSGSA FNKLISRLAA 360 EGYDLSNPVD LKDNWAKHGT NRYITIK* |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028051711.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051712.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051713.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051715.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051716.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051717.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051718.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051719.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051720.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Refseq | XP_028051721.1 | 1e-179 | protein BASIC PENTACYSTEINE6-like | ||||
| Swissprot | Q8L999 | 1e-143 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
| TrEMBL | A0A2R6RMM6 | 0.0 | A0A2R6RMM6_ACTCH; Protein BASIC like | ||||
| STRING | XP_009803495.1 | 1e-171 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5353 | 23 | 38 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G42520.1 | 1e-139 | basic pentacysteine 6 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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