PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn048661

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 271aa MW: 31056.2 Da PI: 7.3198

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn048661	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	26	2.5e-08	7	28	1	22
NAM 1 lppGfrFhPtdeelvveyLkkk 22 lp+GfrFhPtdeelv +yL++ Achn048661 7 LPAGFRFHPTDEELVIHYLCPM 28 799****************976 PP
2	NAM	96.1	5.2e-30	32	104	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++kewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ ++vg+kk Lvfy g+ap+g+kt+W+mheyrl Achn048661 32 GTKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGL--PKAVGIKKALVFYAGKAPRGVKTNWIMHEYRL 104 578**********************************99..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.662	1	130	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-47	4	130	IPR003441	NAC domain
Pfam	PF02365	3.1E-25	8	104	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MTSPLELPAG FRFHPTDEEL VIHYLCPMAL YGTKEWYFFS PRDRKYPNGS RPNRAAGTGY 60 WKATGADKPI GLPKAVGIKK ALVFYAGKAP RGVKTNWIMH EYRLANVDRS AGKKHNLRLD 120 DWVLCRIYNK KGKIEKHNNT VGQKPEKFPE LEDQKPQILS GYTAMPPPPL PSYHQAMGND 180 WSHFETSDSM PRMNTDSSGS EHVASPEVTW EREVQSEPKW NNGLENAFDF QFNYVDAFSE 240 DPFAPHMQPF QQDMMLSPFQ DMLTYMEKPF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-58	5	136	13	174	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028092031.1	1e-141	NAC domain-containing protein 2-like isoform X2
Refseq	XP_028092032.1	1e-141	NAC domain-containing protein 2-like isoform X3
Swissprot	Q39013	1e-100	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A2R6RJM1	0.0	A0A2R6RJM1_ACTCH; NAC domain-containing protein
STRING	POPTR_0007s04780.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-102	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]