PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn048321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31611.8 Da    PI: 4.5225
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn048321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-192174356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Achn048321 21 KKRRLNVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 74
                5668999**********************************************9 PP
2HD-ZIP_I/II124.93.6e-4020111192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y+alk++ ++L++++e+  +e++
   Achn048321  20 EKKRRLNVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYEALKHNYDSLQRDNEARLKEIR 111
                  69********************************************************************************9987665665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-191578IPR009057Homeodomain-like
PROSITE profilePS5007117.3291676IPR001356Homeobox domain
SMARTSM003892.1E-171980IPR001356Homeobox domain
CDDcd000862.20E-162177No hitNo description
PfamPF000464.8E-162174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-192383IPR009057Homeodomain-like
PRINTSPR000317.3E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000317.3E-65672IPR000047Helix-turn-helix motif
PfamPF021833.1E-1376117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLEGLDEEGC VEEYSGQISE KKRRLNVDQV KALEKNFEVE NKLEPERKVK LAQELGLQPR  60
QVAVWFQNRR ARWKTKQLER DYGLLKANYE ALKHNYDSLQ RDNEARLKEI RDLKLKLKED  120
DIDANISVKA EQTVSDSHRH FIEQVVSKSP ADDSLTGSDN FNNSNGVTGD LIFADLKDGS  180
SDSDSSAILN EETHQFSVAA SSSSSTMIKF GCGGSSVNCY QLSESKVVLG DDADDQKLYQ  240
PQFVKIEEHN FFSGDEAACN FFSDEQAPTL QWYCSDQWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028082917.11e-115homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J12e-70ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A2R6RJC80.0A0A2R6RJC8_ACTCH; Homeobox-leucine zipper protein like
STRINGPOPTR_0005s07290.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.19e-64homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]