PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn046361

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 460aa MW: 52531.9 Da PI: 6.1716

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn046361	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	33.2	1e-10	170	198	24	52
RWP-RK 24 eLgvclTvLKriCRqyGIkRWPhRkiksl 52 +L ++ ++ Kr CR+yGI+RWP R + +l Achn046361 170 KLSLSISTFKRVCRKYGINRWPPRNVDKL 198 6889999******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.229	128	218	IPR003035	RWP-RK domain
SMART	SM00666	1.1E-7	157	264	IPR000270	PB1 domain
Pfam	PF02042	6.7E-8	170	198	IPR003035	RWP-RK domain
PROSITE profile	PS51745	18.625	178	264	IPR000270	PB1 domain
Pfam	PF00564	1.3E-12	197	262	IPR000270	PB1 domain
SuperFamily	SSF54277	5.61E-14	199	266	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.8E-13	200	262	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MAEYPLAHFA RKYRLKGCFA INLRSKYTGN DDYVLEIFLP DSNKDKDPLS SLSKILETMK 60 KEFITFTLAY GEVMEKELFV DIIEFQNGEQ HHYVQALQVT GSLPSLEPLQ NGGEIIQVDS 120 SDHQSIHAEQ CVIDVNHPQE LGTKKTSGRE HKNTGVSIEI PFEDIVKYSK LSLSISTFKR 180 VCRKYGINRW PPRNVDKLSM SSGLAELQQQ VAKRLNLEAG SYHIKYKDEE DELILIACDE 240 DLQDCIRTCR SPGSNAVILH IDPISQVYHT KSVTPVSYID CFPASLRPYI RHVKDVALDG 300 NCGFRAIAGL MNIGEEDGWV QVRRDLLTEL NSHVHDYKSM YEGQEMINEL THRLSWFHGC 360 SGKDRWMTMP DMGHLIASCY NVVLYHLSHQ QCLTFLPLRE IAIGFVNDNH FVEEHPEWEI 420 KNGLVIFQRA KESAPCKEIP SLQLINQTLS YARELERIV*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MAEYPLAHFA RKYRLKGCFA INLRSKYTGN DDYVLEIFLP DSNKDKDPLS SLSKILETMK  60
KEFITFTLAY GEVMEKELFV DIIEFQNGEQ HHYVQALQVT GSLPSLEPLQ NGGEIIQVDS  120
SDHQSIHAEQ CVIDVNHPQE LGTKKTSGRE HKNTGVSIEI PFEDIVKYSK LSLSISTFKR  180
VCRKYGINRW PPRNVDKLSM SSGLAELQQQ VAKRLNLEAG SYHIKYKDEE DELILIACDE  240
DLQDCIRTCR SPGSNAVILH IDPISQVYHT KSVTPVSYID CFPASLRPYI RHVKDVALDG  300
NCGFRAIAGL MNIGEEDGWV QVRRDLLTEL NSHVHDYKSM YEGQEMINEL THRLSWFHGC  360
SGKDRWMTMP DMGHLIASCY NVVLYHLSHQ QCLTFLPLRE IAIGFVNDNH FVEEHPEWEI  420
KNGLVIFQRA KESAPCKEIP SLQLINQTLS YARELERIV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028082132.1	7e-59	protein NLP7-like isoform X3
TrEMBL	A0A2R6QMR0	0.0	A0A2R6QMR0_ACTCH; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	5e-21	Nin-like family protein