PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn044801

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 478aa MW: 54379.7 Da PI: 5.6382

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn044801	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.2	1.2e-24	98	197	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li ++ +++++ +++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d + Achn044801 98 KWTDSMVKLLIMVVFYIGDETGSEGndpavkkkavgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLDTM 196 7************99988886433777888999999******************************************55*********99 PP trihelix 86 e 86 + Achn044801 197 D 197 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-21	96	223	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MGSGMLGIEM SLHHHPPHQP PQTPQIPSPL QQQPHSQMVA FGHHEAEHHP QTQQSAKQIY 60 PFAPRGKPQQ LTLSDEDEPG DSAGDGKTKN ISPWQRMKWT DSMVKLLIMV VFYIGDETGS 120 EGNDPAVKKK AVGVLQKKGK WKSVSRAMME RGFYVSPQQC EDKFNDLNKR YKRVNDILGK 180 GTACRVVENQ SLLDTMDHLT PKKKEEVKKL LNSKHLFFRE MCAYHNSCGG GGGSGASVAH 240 HSPDVGAEAP QPIQQQLQGQ RCFHSSDNAL IGRSETDGSK MAVEEEEVED EEEDESEDEN 300 DDEDNEDEDE IVGVRENEQE HEEEDNGDVK SSRKMPRKDD NGDDKSSRKR PRKGTLVLSS 360 PLIQQLSTEL VSVVQDDTKS LSEKGHWMKS RSLQLEEQRV SYQFEAFEIE KQRLKWVKFS 420 TKKEREMERD KLKNERMRLE NERMLLLLRQ KELELLELQQ QQQICSNKRS DPSSITG*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MGSGMLGIEM SLHHHPPHQP PQTPQIPSPL QQQPHSQMVA FGHHEAEHHP QTQQSAKQIY  60
PFAPRGKPQQ LTLSDEDEPG DSAGDGKTKN ISPWQRMKWT DSMVKLLIMV VFYIGDETGS  120
EGNDPAVKKK AVGVLQKKGK WKSVSRAMME RGFYVSPQQC EDKFNDLNKR YKRVNDILGK  180
GTACRVVENQ SLLDTMDHLT PKKKEEVKKL LNSKHLFFRE MCAYHNSCGG GGGSGASVAH  240
HSPDVGAEAP QPIQQQLQGQ RCFHSSDNAL IGRSETDGSK MAVEEEEVED EEEDESEDEN  300
DDEDNEDEDE IVGVRENEQE HEEEDNGDVK SSRKMPRKDD NGDDKSSRKR PRKGTLVLSS  360
PLIQQLSTEL VSVVQDDTKS LSEKGHWMKS RSLQLEEQRV SYQFEAFEIE KQRLKWVKFS  420
TKKEREMERD KLKNERMRLE NERMLLLLRQ KELELLELQQ QQQICSNKRS DPSSITG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022746775.1	0.0	DExH-box ATP-dependent RNA helicase DExH12-like
TrEMBL	A0A2R6PXM7	0.0	A0A2R6PXM7_ACTCH; Trihelix transcription factor
STRING	cassava4.1_006702m	1e-178	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	1e-74	sequence-specific DNA binding transcription factors