PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn044651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 214aa MW: 24217.9 Da PI: 10.7007 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.1e-19 | 56 | 108 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+ qle Le++F+++ ++ +++ +LA++lgL rqV vWFqNrRa++k Achn044651 56 KKRLTRGQLESLESCFQEEIKLEPDRKMRLARELGLAPRQVAVWFQNRRARWK 108 56799***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.5 | 3.1e-37 | 56 | 145 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+rl++ q+++LE++F+ee kLep+rK++lareLgl prqvavWFqnrRAR+k+kqlE y+aLkr+yd++++e+ +L++ev +L++ lk Achn044651 56 KKRLTRGQLESLESCFQEEIKLEPDRKMRLARELGLAPRQVAVWFQNRRARWKAKQLELLYDALKREYDSVSREKLKLQEEVMTLKTMLK 145 9************************************************************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.74E-19 | 39 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-16 | 52 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.39E-14 | 54 | 111 | No hit | No description |
Pfam | PF00046 | 1.4E-16 | 56 | 108 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-20 | 57 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-6 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.3E-7 | 110 | 144 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MGKVRVAKII TRLRVGWVRV VKNTIRLRVG LDPKYPVVGP PPHTAATSSY SGERLKKRLT 60 RGQLESLESC FQEEIKLEPD RKMRLARELG LAPRQVAVWF QNRRARWKAK QLELLYDALK 120 REYDSVSREK LKLQEEVMTL KTMLKVQSKR NHVSTEISGD VTAESTSFVN RSSGRLGGTS 180 HQQMADGGYV FSVDDYNPVA VPPYWGTVLP SHP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 110 | RRARWKAKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022747607.1 | 4e-71 | putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A2R6PXK8 | 1e-125 | A0A2R6PXK8_ACTCH; Homeobox-leucine zipper protein like | ||||
STRING | EMJ04088 | 8e-68 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 3e-41 | homeobox 51 |