PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn042271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 285aa    MW: 30706.7 Da    PI: 9.445
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn042271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB158.98.1e-501121991097
       NF-YB  10 ianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 +  +srimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyv+plkvyl+++r++egek
  Achn042271 112 LVGLSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVNPLKVYLQRFRDVEGEK 199
                 56799*********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.77E-33116207IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.1E-43116205IPR009072Histone-fold
PfamPF008087.0E-23116173IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.0E-19137155No hitNo description
PROSITE patternPS006850140156IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.0E-19156174No hitNo description
PRINTSPR006154.0E-19175193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVSTGEERGL VVYDGDYFEA DHVPHAVSTV LISPVTFNRT AKKSSVGMHT YRRITVQNSP  60
RVDVDFVIIA LIQRTTPITH LTPSHIVDLL RNAILPSPAP VNRRRDSVFR RLVGLSRIMK  120
KALPANAKIS KDAKETVQEC VSEFISFITG EASDKCQREK RKTINGDDLL WAMTTLGFED  180
YVNPLKVYLQ RFRDVEGEKT AYAGRLGGER EASSGGGGGS GSVVNLGNSG GSFVEGGAYG  240
RMPSNVMMMG GNHHQGHVYG SGTYEQLANG GPGNVGTGYP GSRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-38104194393NF-YB
4awl_B3e-38104194494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-38104194494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3793988e-62FQ379398.1 Vitis vinifera clone SS0AEB10YI23.
GenBankFQ3897578e-62FQ389757.1 Vitis vinifera clone SS0AEB19YM07.
GenBankGU9027898e-62GU902789.1 Triticum monococcum nuclear transcription factor Y subunit B5 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634760.12e-76PREDICTED: nuclear transcription factor Y subunit B-3
TrEMBLA0A2R6P5351e-110A0A2R6P535_ACTCH; Nuclear transcription factor Y subunit B-3 like
STRINGVIT_19s0015g00440.t017e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.16e-57nuclear factor Y, subunit B3