PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn039341

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

DBB

Protein Properties

Length: 411aa MW: 45469.9 Da PI: 4.9915

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn039341	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	8.3e-08	14	52	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++k + l+C+ ++ lC C ++ H+ H Achn039341 14 ACDFCNQKSAVLYCKADSAKLCLFCDQQVHSAnalslkH 52 6*****************************655666666 PP
2	zf-B_box	17.2	1.1e-05	55	96	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++C+++++ ++ C + + lC dC H + H+ Achn039341 55 SQICDNCQSDSVSVRCSTEGLVLCSDCDWDAHGNcsvsglHD 96 689************************999995566666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.67	10	57	IPR000315	B-box-type zinc finger
SMART	SM00336	1.6E-9	10	57	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.3E-6	14	54	IPR000315	B-box-type zinc finger
CDD	cd00021	8.34E-7	15	45	No hit	No description
PROSITE profile	PS50119	8.688	53	100	IPR000315	B-box-type zinc finger
CDD	cd00021	4.53E-4	57	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MDKNCKSTAS AISACDFCNQ KSAVLYCKAD SAKLCLFCDQ QVHSANALSL KHVRSQICDN 60 CQSDSVSVRC STEGLVLCSD CDWDAHGNCS VSGLHDRAAI EGFSGCPSAS ELASLWGFDL 120 KTKKSANSSD YTSVCKSMVF NFHDLMAITE DECPNSVSVP SFDTPGVSNL RNSCCGRYKN 180 VVYKQVVELA KREVVRADGD GAEMGPGTPQ YANSESLEDG NGGDEELLHQ RTTLTSMLMD 240 PGESACVAEV NNMWNCNPTY QTPQIWDFNS GRSKDCEEPD QIETGRGPEN SDFVINNYSD 300 FIKETSLATT EMMEDMYEMN CSIIYKGMPL QHNQSSCRPA KAESNSLLVL ESRLHEPKTY 360 GSISNIQFKE QRLLSRTVRT TMTNVDMELM AQNRGNAMMR YKEKKKTRRQ *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MDKNCKSTAS AISACDFCNQ KSAVLYCKAD SAKLCLFCDQ QVHSANALSL KHVRSQICDN  60
CQSDSVSVRC STEGLVLCSD CDWDAHGNCS VSGLHDRAAI EGFSGCPSAS ELASLWGFDL  120
KTKKSANSSD YTSVCKSMVF NFHDLMAITE DECPNSVSVP SFDTPGVSNL RNSCCGRYKN  180
VVYKQVVELA KREVVRADGD GAEMGPGTPQ YANSESLEDG NGGDEELLHQ RTTLTSMLMD  240
PGESACVAEV NNMWNCNPTY QTPQIWDFNS GRSKDCEEPD QIETGRGPEN SDFVINNYSD  300
FIKETSLATT EMMEDMYEMN CSIIYKGMPL QHNQSSCRPA KAESNSLLVL ESRLHEPKTY  360
GSISNIQFKE QRLLSRTVRT TMTNVDMELM AQNRGNAMMR YKEKKKTRRQ *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249152.1	1e-131	PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBL	A0A2R6RZ54	0.0	A0A2R6RZ54_ACTCH; Zinc finger protein like
STRING	XP_010249152.1	1e-130	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6703	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-80	B-box type zinc finger protein with CCT domain