PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn037021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 387aa MW: 42436 Da PI: 9.7736 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.3 | 4.5e-42 | 214 | 313 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+l+++ Achn037021 214 PCAACKLLRRRCAQECPFSPYFSPHEPQKFATVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNLVRS 312 7***********************************************************************************************998 PP DUF260 100 e 100 e Achn037021 313 E 313 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.803 | 213 | 314 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-42 | 214 | 311 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MLQTKHDEKL FSRFLSKENS KAEPSFGVLY YGGSSGTIPF MWESQPGTPK HPLSQTSLPT 60 LTPPPSYQST TTPKTKPTQK SSSRTKFLST LFPRFPSKKI NYVAPSFSSS FASSSSSFSS 120 SSTPMNAYVH RRGCLSRSRS SVPFGFDDDD EMATKSPTST LCFGGRLGFF KEFRGSRERF 180 DEIGKKIKRD SDTSIQMGRR YMVGPPGTLN TITPCAACKL LRRRCAQECP FSPYFSPHEP 240 QKFATVHKVF GASNVSKMLM EVPESQRADA ANSLVYEANV RLRDPVYGCM GAISALQQQV 300 QSLQAELNLV RSEILKYKYR DSDIIPSSHI ALFSSGVVSI ASPPPAPPPP PPPLPPASSS 360 SSLYTPLSTD TDYSTISNDQ NVPYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-44 | 206 | 328 | 3 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-44 | 206 | 328 | 3 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022746093.1 | 1e-114 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 3e-80 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2R6RWP2 | 1e-148 | A0A2R6RWP2_ACTCH; LOB domain-containing protein | ||||
STRING | cassava4.1_031813m | 1e-112 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-79 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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