PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn037021

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 387aa MW: 42436 Da PI: 9.7736

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn037021	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.3	4.5e-42	214	313	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+l+++ Achn037021 214 PCAACKLLRRRCAQECPFSPYFSPHEPQKFATVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNLVRS 312 7***********************************************************************************************998 PP DUF260 100 e 100 e Achn037021 313 E 313 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.803	213	314	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-42	214	311	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MLQTKHDEKL FSRFLSKENS KAEPSFGVLY YGGSSGTIPF MWESQPGTPK HPLSQTSLPT 60 LTPPPSYQST TTPKTKPTQK SSSRTKFLST LFPRFPSKKI NYVAPSFSSS FASSSSSFSS 120 SSTPMNAYVH RRGCLSRSRS SVPFGFDDDD EMATKSPTST LCFGGRLGFF KEFRGSRERF 180 DEIGKKIKRD SDTSIQMGRR YMVGPPGTLN TITPCAACKL LRRRCAQECP FSPYFSPHEP 240 QKFATVHKVF GASNVSKMLM EVPESQRADA ANSLVYEANV RLRDPVYGCM GAISALQQQV 300 QSLQAELNLV RSEILKYKYR DSDIIPSSHI ALFSSGVVSI ASPPPAPPPP PPPLPPASSS 360 SSLYTPLSTD TDYSTISNDQ NVPYFG*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MLQTKHDEKL FSRFLSKENS KAEPSFGVLY YGGSSGTIPF MWESQPGTPK HPLSQTSLPT  60
LTPPPSYQST TTPKTKPTQK SSSRTKFLST LFPRFPSKKI NYVAPSFSSS FASSSSSFSS  120
SSTPMNAYVH RRGCLSRSRS SVPFGFDDDD EMATKSPTST LCFGGRLGFF KEFRGSRERF  180
DEIGKKIKRD SDTSIQMGRR YMVGPPGTLN TITPCAACKL LRRRCAQECP FSPYFSPHEP  240
QKFATVHKVF GASNVSKMLM EVPESQRADA ANSLVYEANV RLRDPVYGCM GAISALQQQV  300
QSLQAELNLV RSEILKYKYR DSDIIPSSHI ALFSSGVVSI ASPPPAPPPP PPPLPPASSS  360
SSLYTPLSTD TDYSTISNDQ NVPYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-44	206	328	3	125	LOB family transfactor Ramosa2.1
5ly0_B	6e-44	206	328	3	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022746093.1	1e-114	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	3e-80	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2R6RWP2	1e-148	A0A2R6RWP2_ACTCH; LOB domain-containing protein
STRING	cassava4.1_031813m	1e-112	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-79	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]