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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn036551 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | Trihelix | ||||||||
Protein Properties | Length: 261aa MW: 30804.8 Da PI: 7.5743 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 78.7 | 8.8e-25 | 19 | 101 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++L++ar e+++++ ++k++k lWe v+ kmr++g++rs++qCk+kw+nl +ryk ++++e ++ ++++p++ +le Achn036551 19 QWSVHETRDLLAARAELDQTFLETKRNKVLWEVVATKMRDKGYNRSAEQCKSKWKNLVTRYKGCETMELEG---MRQQFPFYYELE 101 7********************************************************************97...55679**99998 PP | |||||||
2 | Myb_DNA-binding | 23.5 | 1.3e-07 | 19 | 75 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqky 47 W+ E l+ a ++l W+ +a +m +R+++qcks+w ++ Achn036551 19 QWSVHETRDLLAARAELDQTfletkrnkvLWEVVATKMRdkgYNRSAEQCKSKWKNL 75 59999999999999999999999999999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.1E-6 | 16 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.76E-23 | 18 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-4 | 19 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.6E-21 | 19 | 103 | No hit | No description |
PROSITE profile | PS50090 | 7.654 | 20 | 76 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEGHHRTTVG IDSADRFPQW SVHETRDLLA ARAELDQTFL ETKRNKVLWE VVATKMRDKG 60 YNRSAEQCKS KWKNLVTRYK GCETMELEGM RQQFPFYYEL EAIFAARMER MLWIEAEGGS 120 SSGTKNKGLA IASDDEEDNE ENDREKAGRS KKKKKVHKSG NSPSSSGNIS VLKEALEDLM 180 KQQMQIEMEW LKAYQAREEE RRVREMEWRQ TMEALESERI VMERRWRERE EQRTMREETR 240 AEKRDALISA LLNKLRREDM * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019054174.1 | 1e-110 | PREDICTED: trihelix transcription factor GT-3b-like isoform X1 | ||||
Swissprot | Q9SDW0 | 4e-64 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A2R6RXC9 | 0.0 | A0A2R6RXC9_ACTCH; Trihelix transcription factor GT-3b like | ||||
STRING | XP_010264622.1 | 1e-109 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 3e-53 | Trihelix family protein |