PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn035131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 555aa    MW: 60107.2 Da    PI: 10.2887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn035131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08437490455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST...CHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKls...KaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P++ +  ++K s   Ka +L + ++Y++sLq
  Achn035131 437 SHSLAERVRREKISERMKLLQDLVPSC-NKVCRKFSvtgKALMLDEIINYVQSLQ 490
                 8*************************7.57888877777**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-14431504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.36E-10431494No hitNo description
Gene3DG3DSA:4.10.280.101.8E-14433503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396433489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-6437490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-10439495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MFRGVIGGGG GIRKRAARGR GQSGEVNCGS PKMIVEGGTI QWNARGGGQR SKVGQVVVGF  60
QQHSSISSTM DKDYFLNSGI PSALHFDPSS LTNWHSLSSN QELNSSPEQS SECFLFESAM  120
SSMVSSPAVS NSAISNDGFG ISELIGKLGN IYSSGESRHL LAATAAYIGG GSRSPNTSCY  180
STPLNSPPKL HFPIDHQVND KMPNLGNSIP NNPNLPAVSA DPGFAERAAK FSCFGNRSFN  240
GRTSQLGSNN IKLPYRSSPS MNSVKFHRVS SSPSLKANGF PMGAQQNQNS TQNQIEMRST  300
NVSETKFGKI SDRTEYCGSN EGSSVSEQIP NGEIGLKTPS ESNSRKRKAV SRGKSSVNAT  360
NTKVAGGEEN PNSKRSKSAE ANGSVNGSVK TDEEVKGVTS NGEGDEDQKQ AKANSKPPEP  420
PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKLLQDLV PSCNKVCRKF SVTGKALMLD  480
EIINYVQSLQ RQVEFLSMKL ASVNTLDVKM DNLLSTDIPR RHRLFSVTRS QKSHNYKPIF  540
PLCQWMNFAK AFHR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057652.10.0transcription factor bHLH62-like
TrEMBLA0A2R6QSL10.0A0A2R6QSL1_ACTCH; Transcription factor bHLH78 like
STRINGEMJ023811e-146(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.13e-73bHLH family protein