PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn033651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 311aa    MW: 35190.5 Da    PI: 6.6865
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn033651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.63.9e-5651311129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL++kv++  + + ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ +g l
  Achn033651   5 LPPGFRFHPTDEELITHYLNHKVSDFGFAA-RTIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-GGLL 101
                 79*************************999.88***************999999****************************************.9*** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfykgrapkgekt+Wvmheyrle
  Achn033651 102 VGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 131
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-643151IPR003441NAC domain
PROSITE profilePS5100560.0355151IPR003441NAC domain
PfamPF023657.8E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEKNLPPGFR FHPTDEELIT HYLNHKVSDF GFAARTIADV DLNKCEPWDL PAKASMGEKE  60
WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGL LVGMKKTLVF YKGRAPKGEK  120
TNWVMHEYRL ETKLSFKPTK EEWVVCRVFQ KIASALKKLQ ETQSSQPSLD SPGDNYNPLS  180
SEFGDIELPN LNSIANSSSA LSNGSMQNYN GDNNANMSMN MNLDMLPSFS WPSNLLGSNL  240
SMNALLLRAL QLRSYHQPRD QASNVDYSNF MPQGISQFGT DFVSSNFQAS SSRDLDSEPQ  300
EQPFNLDSIW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-57415716171NO APICAL MERISTEM PROTEIN
1ut4_B3e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_A3e-57415716171NO APICAL MERISTEM PROTEIN
1ut7_B3e-57415716171NO APICAL MERISTEM PROTEIN
3swm_A3e-57415719174NAC domain-containing protein 19
3swm_B3e-57415719174NAC domain-containing protein 19
3swm_C3e-57415719174NAC domain-containing protein 19
3swm_D3e-57415719174NAC domain-containing protein 19
3swp_A3e-57415719174NAC domain-containing protein 19
3swp_B3e-57415719174NAC domain-containing protein 19
3swp_C3e-57415719174NAC domain-containing protein 19
3swp_D3e-57415719174NAC domain-containing protein 19
4dul_A3e-57415716171NAC domain-containing protein 19
4dul_B3e-57415716171NAC domain-containing protein 19
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009316.11e-150PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLR35e-84NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A2R6PCW70.0A0A2R6PCW7_ACTCH; NAC domain-containing protein
STRINGPOPTR_0015s03700.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-119NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]