PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn033651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 311aa MW: 35190.5 Da PI: 6.6865 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.6 | 3.9e-56 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL++kv++ + + ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ +g l Achn033651 5 LPPGFRFHPTDEELITHYLNHKVSDFGFAA-RTIADVDLNKCEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-GGLL 101 79*************************999.88***************999999****************************************.9*** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfykgrapkgekt+Wvmheyrle Achn033651 102 VGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 131 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-64 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.035 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-29 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MEKNLPPGFR FHPTDEELIT HYLNHKVSDF GFAARTIADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGL LVGMKKTLVF YKGRAPKGEK 120 TNWVMHEYRL ETKLSFKPTK EEWVVCRVFQ KIASALKKLQ ETQSSQPSLD SPGDNYNPLS 180 SEFGDIELPN LNSIANSSSA LSNGSMQNYN GDNNANMSMN MNLDMLPSFS WPSNLLGSNL 240 SMNALLLRAL QLRSYHQPRD QASNVDYSNF MPQGISQFGT DFVSSNFQAS SSRDLDSEPQ 300 EQPFNLDSIW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-57 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-57 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-57 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011009316.1 | 1e-150 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLR3 | 5e-84 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2R6PCW7 | 0.0 | A0A2R6PCW7_ACTCH; NAC domain-containing protein | ||||
STRING | POPTR_0015s03700.1 | 1e-148 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-119 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
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