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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn033271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30613 Da PI: 4.6326 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrd k r++lg+f taeeAa a+++a+++++g Achn033271 118 HYRGVRMRP-WGKYAAEIRDS---SrKGSRVWLGTFETAEEAALAYDKAALRIRG 168 7********.**********3...2234*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 117 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-38 | 118 | 182 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 118 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.24E-30 | 118 | 176 | No hit | No description |
PROSITE profile | PS51032 | 23.209 | 118 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.05E-23 | 118 | 177 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.9E-11 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAVEEQHDHK SSEAILENVW ASYIAQNEPN TLELSKEWEE MPSLDGRDGF MEVLQRLPSL 60 GRWISMGAEA WEELLGGINC PPSNTEELCN PEIITSDDHD NSNSKSCEKR VEKARPRHYR 120 GVRMRPWGKY AAEIRDSSRK GSRVWLGTFE TAEEAALAYD KAALRIRGPK AHLNFPLEAI 180 ASKDMEIPCL ENDTNPSSTI FRGKDSSSYE PFYRCGERIS DSRKRVSGES WENEDLGVSG 240 ESVLKRMATI EQKIGDGYDV LEFQGLGSDY L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-28 | 117 | 177 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-28 | 114 | 177 | 1 | 64 | ATERF1 |
3gcc_A | 9e-28 | 114 | 177 | 1 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028116147.1 | 1e-101 | ethylene-responsive transcription factor ERF091-like | ||||
TrEMBL | A0A2R6QA88 | 0.0 | A0A2R6QA88_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | EOY28113 | 1e-94 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11237 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 2e-37 | ERF family protein |