PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn033091

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 95aa MW: 10671.2 Da PI: 10.9683

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn033091	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.4e-08	53	86	2	41
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41 + hn+ Er RR ++N ++ Lr+llP a + sK+ Achn033091 53 KLDHNAKERVRRMKLNASYLALRSLLPIA------RRSKV 86 678************************98......34444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.0E-8	46	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-6	50	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.29E-5	51	88	No hit	No description
PROSITE profile	PS50888	9.007	51	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-5	53	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MSSAIGQPSE GKESDGDTLS PKTRERHRRI KYLQTEKMAV QHSAEEGSNA KKKLDHNAKE 60 RVRRMKLNAS YLALRSLLPI ARRSKVEISP PNIF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019078981.1	3e-19	PREDICTED: uncharacterized protein LOC100258265 isoform X1
Refseq	XP_019078982.1	3e-19	PREDICTED: transcription factor bHLH100 isoform X2
TrEMBL	A0A2R6RGL8	1e-52	A0A2R6RGL8_ACTCH; Transcription factor bHLH100 like
STRING	VIT_12s0034g02150.t01	7e-18	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15451	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	1e-09	bHLH family protein