PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn032521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19487.4 Da PI: 7.3842 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.1 | 3.4e-39 | 23 | 116 | 7 | 100 |
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lp +r da++s+vyeA+ar+rdP+yG+vg i++lq+q++ l+++lal+++e Achn032521 23 LLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPLYQRGDAVKSIVYEANARIRDPIYGCVGAISSLQHQIDVLQTQLALAQAE 116 589**************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.979 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-39 | 23 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MLLKIITTSK SFDLNLVRDL ALLLRRRCAQ DCVFAPYFPA DEPQKFASVH KVFGASNVNK 60 MLQELPLYQR GDAVKSIVYE ANARIRDPIY GCVGAISSLQ HQIDVLQTQL ALAQAEVVHM 120 QMRQVSSSMS SNPATNSLEN GSDKAIPISQ TNKSLFNMDI MMVDQPNMGD SFWSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 23 | 137 | 17 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 23 | 137 | 17 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882228.1 | 4e-80 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 7e-61 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2R6QTD0 | 1e-110 | A0A2R6QTD0_ACTCH; LOB domain-containing protein | ||||
STRING | XP_009603165.1 | 7e-77 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 5e-52 | LOB domain-containing protein 4 |