PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn032281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | YABBY | ||||||||
Protein Properties | Length: 104aa MW: 11760.3 Da PI: 9.5355 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 95.8 | 1e-29 | 32 | 94 | 101 | 159 |
YABBY 101 l....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 l ++++d+evp + v+rPPekrqr+Psayn fikeei+r+ka+ P+++h+eafsaaakn Achn032281 32 LvissDDEDDDEVPVNHIVNRPPEKRQRAPSAYNNFIKEEIRRLKAKYPNMTHKEAFSAAAKN 94 223336677889998888********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-26 | 19 | 94 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-6 | 50 | 93 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MRFMIHLQSK QEVSPELEAD AEKGLDKRSP SLVISSDDED DDEVPVNHIV NRPPEKRQRA 60 PSAYNNFIKE EIRRLKAKYP NMTHKEAFSA AAKNVKKKGG KND* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115851.1 | 2e-38 | axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 8e-25 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2R6RE74 | 2e-54 | A0A2R6RE74_ACTCH; Axial regulator YABBY like | ||||
STRING | VIT_01s0127g00330.t01 | 3e-34 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-19 | YABBY family protein |
Publications ? help Back to Top | |||
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