PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn030801

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 349aa MW: 39120.8 Da PI: 5.1899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn030801	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.4	9.4e-07	240	277	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk+L Achn030801 240 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKYL 277 66788899999***998.....8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.842	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-9	238	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-12	238	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0017	239	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.78E-7	240	281	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGEEFQAGVL GSTWWNNSST SFGWPNMSDG SMVFQDMQMM GNIGISSSTT TDWNHTLFSG 60 SERRESNYNS CMLQDDMNLR QENGMDCPQI QKEWNLKELS IVVEQDSNSG IDEFNQTSQG 120 FSPMVSTILQ TLFEIDPQPP QSLFDNRSLN YHSTTTCETN SNVFSPSLEN FTPLMRPSLP 180 KQQTLSPLHP NGEVAQDSFS VGKKSSANEP VFKRPRIETP SPLPTFKKWM RIFVAFYQVR 240 KEKLGDRITA LQQLVSPFGK TDTASVLQEA IEYIKYLHDQ VNVLSTPYMK NGPPIQHQQT 300 SNKLKDAEGH KQDLGTRGLC LVPISSTFPV ANATTVDFWP PTFGGSFR*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGEEFQAGVL GSTWWNNSST SFGWPNMSDG SMVFQDMQMM GNIGISSSTT TDWNHTLFSG  60
SERRESNYNS CMLQDDMNLR QENGMDCPQI QKEWNLKELS IVVEQDSNSG IDEFNQTSQG  120
FSPMVSTILQ TLFEIDPQPP QSLFDNRSLN YHSTTTCETN SNVFSPSLEN FTPLMRPSLP  180
KQQTLSPLHP NGEVAQDSFS VGKKSSANEP VFKRPRIETP SPLPTFKKWM RIFVAFYQVR  240
KEKLGDRITA LQQLVSPFGK TDTASVLQEA IEYIKYLHDQ VNVLSTPYMK NGPPIQHQQT  300
SNKLKDAEGH KQDLGTRGLC LVPISSTFPV ANATTVDFWP PTFGGSFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028062952.1	1e-123	transcription factor bHLH112-like isoform X1
Swissprot	Q8GXT3	2e-50	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2R6RAZ7	0.0	A0A2R6RAZ7_ACTCH; Transcription factor bHLH112 like
STRING	VIT_00s0274g00070.t01	1e-122	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	9e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]