PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn030741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GeBP
Protein Properties Length: 388aa    MW: 42251.1 Da    PI: 9.6099
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn030741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573127.84.5e-40165260297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 lfq+lwse+Deiv+L Gl +++a++g++p++d+++f++f+kks++++vsk+ql++KirrL+kK+++++ k ++g++psfsk+h+qk++elskkiWg
  Achn030741 165 LFQKLWSEDDEIVILNGLTKYAAEKGADPVADTNGFHDFIKKSLHVDVSKTQLSDKIRRLRKKYENNSGKGQNGQDPSFSKPHEQKAYELSKKIWG 260
                 79*********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-36166260IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MASNRRPETE AQAGSSSEEE EGSSEENEDQ EVSESESEEE KAPAPTPQKR PAPKKPATST  60
KPQSSSSDES GSDSDLDPTP NSTRRPDPTI KPIASKPMEE PPKVTKKPRS KPRSATPAAA  120
NPSAAAKRAA ESGSKKNRES KRAKKKADDT DNTAKKTGDD AKKQLFQKLW SEDDEIVILN  180
GLTKYAAEKG ADPVADTNGF HDFIKKSLHV DVSKTQLSDK IRRLRKKYEN NSGKGQNGQD  240
PSFSKPHEQK AYELSKKIWG NEANGVGVDS PNPKVNGKPR KNQSQKTTMA SPKVDGLASP  300
DKVKEGKTRE VESNLGSLGF NKSIGGLGLE EQIIKDGLEM IIGAKMLELN VKWEQLSVKE  360
VELYLKRLDL IREQAMLVLE ALKSSGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15258PKKPATS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098167.11e-113GLABROUS1 enhancer-binding protein-like
TrEMBLA0A2R6RAY30.0A0A2R6RAY3_ACTCH; Transcription factor
STRINGXP_008439944.18e-91(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-35DNA-binding storekeeper protein-related transcriptional regulator