PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn030321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 271aa MW: 30399.8 Da PI: 9.6637 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.9 | 1.1e-25 | 29 | 117 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn Y++ +GFs+r+ +s+ks+++g + r+fvCsk+g+r ++k+ +++r+etrt+C+a++ +++++ ++kw+v +e++HnH+l Achn030321 29 EFYNVYGRVMGFSIRICYSTKSQKDGVLIGRKFVCSKQGTRGKDKRC-LVVEHPRKETRTKCDANMSISLNReTSKWVVVGFEEKHNHSL 117 6******************************************9998.88899******************99***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.1E-22 | 29 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MNVKENEHLI EDYTPCPQKG FESEKAAYEF YNVYGRVMGF SIRICYSTKS QKDGVLIGRK 60 FVCSKQGTRG KDKRCLVVEH PRKETRTKCD ANMSISLNRE TSKWVVVGFE EKHNHSLHLL 120 ECAHMMKSQR TIHEAQAINV DIAADSGLSL KASHDLLSAQ AGGKEFLGFT REDQKNYLRS 180 SSVRLMAPTT VTWGSNSGPS NSDRRPLISL FSRSLTSSDG IAHTKYMRFG ASTSMEIEQI 240 KREKIKVMKP WLVEQGCSEK LPAGTPVPKF * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051873.1 | 3e-73 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6NMW1 | 5e-49 | A0A2Z6NMW1_TRISU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-25 | FAR1-related sequence 5 |