PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn030321
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 271aa    MW: 30399.8 Da    PI: 9.6637
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn030321genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.91.1e-2529117189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                 +fYn Y++ +GFs+r+ +s+ks+++g  + r+fvCsk+g+r ++k+     +++r+etrt+C+a++ +++++ ++kw+v  +e++HnH+l
  Achn030321  29 EFYNVYGRVMGFSIRICYSTKSQKDGVLIGRKFVCSKQGTRGKDKRC-LVVEHPRKETRTKCDANMSISLNReTSKWVVVGFEEKHNHSL 117
                 6******************************************9998.88899******************99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.1E-2229117IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNVKENEHLI EDYTPCPQKG FESEKAAYEF YNVYGRVMGF SIRICYSTKS QKDGVLIGRK  60
FVCSKQGTRG KDKRCLVVEH PRKETRTKCD ANMSISLNRE TSKWVVVGFE EKHNHSLHLL  120
ECAHMMKSQR TIHEAQAINV DIAADSGLSL KASHDLLSAQ AGGKEFLGFT REDQKNYLRS  180
SSVRLMAPTT VTWGSNSGPS NSDRRPLISL FSRSLTSSDG IAHTKYMRFG ASTSMEIEQI  240
KREKIKVMKP WLVEQGCSEK LPAGTPVPKF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051873.13e-73protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6NMW15e-49A0A2Z6NMW1_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-25FAR1-related sequence 5