PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn030051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 266aa    MW: 28157.8 Da    PI: 4.8181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn030051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10114158554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P++      K + a++L + ++Y+k L
  Achn030051 114 HSIAERLRRERIAERMKALQELVPSC-----NKSDRAAMLDEIIDYVKFL 158
                 99***********************8.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.49E-11107163No hitNo description
SuperFamilySSF474591.44E-15107168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.304109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-16111169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7114158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-11115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MANNPPEGYA DDFLEQILAV PSYSSLAGTD SVSTVSQLSS AVGGGGGSGS GFQQPFVPLG  60
LSLDNGRDDL SSGAFAVKNA FHGQPIPSTT VSVPQLPAIR PRVRARRGQA TDPHSIAERL  120
RRERIAERMK ALQELVPSCN KSDRAAMLDE IIDYVKFLRL QVKVLSMSRL GGAGAVAQLV  180
ADIPLSSVEG ENSEGGCSQS AWDNWSNHDI EQEVAKLMEE DVGAAMQYLQ TKALCIMPIS  240
LAALIYPTHS PDATTLVKPE PNGPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126723.11e-147transcription factor UNE12-like
SwissprotO227682e-85UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2R6RUW61e-179A0A2R6RUW6_ACTCH; Transcription factor like
STRINGVIT_05s0020g04620.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.25e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]