PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn027211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 346aa    MW: 39158.8 Da    PI: 8.6119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn027211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011225247123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+C+ C k+F++   L  H  +H
  Achn027211 225 YVCETCFKVFRSYQALGGHRASH 247
                 9***********99999998887 PP
2zf-C2H213.60.00021269291123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++Fs+   L  H rtH
  Achn027211 269 HECPYCFRVFSSGQALGGHKRTH 291
                 79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355270426IPR015880Zinc finger, C2H2-like
PfamPF139120.0042427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723225252IPR007087Zinc finger, C2H2
SMARTSM003550.3225247IPR015880Zinc finger, C2H2-like
PfamPF139127.8E-10225249IPR007087Zinc finger, C2H2
SuperFamilySSF576673.53E-8225291No hitNo description
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
PfamPF139126.6E-11268291IPR007087Zinc finger, C2H2
PROSITE profilePS501579.556269296IPR007087Zinc finger, C2H2
SMARTSM003550.13269291IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEKHKCKPCL KSFANGRALG GQMRCHMMNL CVPPKIEQQQ LNYMDQLGRE TESASSSSSS  60
DDDDNEERSE SLFYELRESP KKSIRLVDRE FSFARSEVLI QDTESETESS QNPIRRRSKR  120
IRKSGISDYH PPFYVQNPKQ VRDAKKSKSG MFGKTESEPV SSISDTSPEE DVAYCLMMLS  180
RDKWKRNEKR ANQQAERDEE DENDRTDDSG EYFKSSKGRG GQAKYVCETC FKVFRSYQAL  240
GGHRASHKKP RLQNNLVSKP EPKNGGKVHE CPYCFRVFSS GQALGGHKRT HVTGSSSTTI  300
VAPNKSKFGE NMIDLNLPAP IEEDEISQIE LPAVSHAKFV KPIRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278670.11e-103PREDICTED: zinc finger protein ZAT4
RefseqXP_021620585.11e-103zinc finger protein ZAT9-like
TrEMBLA0A2R6QPH00.0A0A2R6QPH0_ACTCH; Zinc finger protein
STRINGVIT_15s0021g02720.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-56C2H2-like zinc finger protein