PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn027211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 346aa MW: 39158.8 Da PI: 8.6119 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 225 | 247 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k+F++ L H +H Achn027211 225 YVCETCFKVFRSYQALGGHRASH 247 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00021 | 269 | 291 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H rtH Achn027211 269 HECPYCFRVFSSGQALGGHKRTH 291 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 270 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0042 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 225 | 252 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 225 | 247 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.8E-10 | 225 | 249 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.53E-8 | 225 | 291 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 227 | 247 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.6E-11 | 268 | 291 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 269 | 296 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 269 | 291 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 271 | 291 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEKHKCKPCL KSFANGRALG GQMRCHMMNL CVPPKIEQQQ LNYMDQLGRE TESASSSSSS 60 DDDDNEERSE SLFYELRESP KKSIRLVDRE FSFARSEVLI QDTESETESS QNPIRRRSKR 120 IRKSGISDYH PPFYVQNPKQ VRDAKKSKSG MFGKTESEPV SSISDTSPEE DVAYCLMMLS 180 RDKWKRNEKR ANQQAERDEE DENDRTDDSG EYFKSSKGRG GQAKYVCETC FKVFRSYQAL 240 GGHRASHKKP RLQNNLVSKP EPKNGGKVHE CPYCFRVFSS GQALGGHKRT HVTGSSSTTI 300 VAPNKSKFGE NMIDLNLPAP IEEDEISQIE LPAVSHAKFV KPIRQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278670.1 | 1e-103 | PREDICTED: zinc finger protein ZAT4 | ||||
Refseq | XP_021620585.1 | 1e-103 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A2R6QPH0 | 0.0 | A0A2R6QPH0_ACTCH; Zinc finger protein | ||||
STRING | VIT_15s0021g02720.t01 | 1e-103 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 9e-56 | C2H2-like zinc finger protein |