PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn025371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C3H | ||||||||
Protein Properties | Length: 660aa MW: 72001.3 Da PI: 6.13 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.1e-07 | 268 | 288 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Achn025371 268 PCPDFRK-GACRRGDMCEYAHG 288 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.2E-17 | 10 | 151 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.54E-17 | 17 | 150 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.6E-11 | 53 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0021 | 57 | 87 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 19.306 | 57 | 165 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.05E-16 | 57 | 135 | No hit | No description |
PRINTS | PR01415 | 8.6E-5 | 58 | 73 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.342 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 3.2E-5 | 92 | 124 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 8.6E-5 | 111 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 263 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 267 | 290 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-5 | 268 | 288 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 268 | 290 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 296 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.456 | 298 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 14 | 298 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MNNLTVETED TFASLLELAA NNDVEGFKRS IERDISGTDE VGLWYGRKKG SKHMVLDHRT 60 PLMVAAIYGS TDVVKLILSV SNSDVNRSCG LDKCTALHCA ASGGSINALD VVKVLLEAGA 120 DPNLVDANGH CPFDVIVVSP KFQDLKFSLE KFLATNGSNS NSNSPPLSPS PENRSLSSGT 180 DSTSSPQSPK FNEISVISAS EKKEYPIDPS LPDIKNNIYS TDEFRMFSFK VRPCSRAYSH 240 DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR 300 TRLCKDGTNC NRRVCFFAHT PEELRPLYVS TGSAVPSPRS GSTAMDFAAA MSLLPGSPSS 360 PLTPPMSPSG HGISSNMGWP QPNVPSLHLP GSNLQSSRLR SSLSARDIAA EDLDMFSDFD 420 LQQKQLLNEL SRLSLNRSTH SKTLTTPSNL EDLFSSESSS PRYSPTPKSA YLNQFQQQKI 480 IASQSPMNAN FSPKTMDQPL MQASFGVPSM SPCGVDPISP MGSRVSMLSQ HQQQQFRSLS 540 SRDLGSNSSA IGGNPSWAKW GSSNGKPDWS VNADEFGKIR RSSSFELGNN GEEPDLSWVQ 600 SLVKESPEEL KEKPETGALA GVGSSGEGSD LHSSQIESID QSDLSAWLEQ KQLDQLMAQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092752.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_028092753.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2R6Q4K5 | 0.0 | A0A2R6Q4K5_ACTCH; Zinc finger CCCH domain-containing protein | ||||
STRING | XP_002526718.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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