PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn024641 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 29526.3 Da PI: 5.9273 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20 | 1.9e-06 | 9 | 31 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ksFs+ L H+r H Achn024641 9 YPCPICSKSFSNGKALGGHMRAH 31 99*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 8 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.89E-8 | 8 | 31 | No hit | No description |
SMART | SM00355 | 0.0027 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.884 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-9 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.89E-8 | 206 | 233 | No hit | No description |
SMART | SM00355 | 49 | 211 | 233 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MAFPSMERYP CPICSKSFSN GKALGGHMRA HLAFHPLPPK PQELEDLNKA NPSMRLRSRE 60 GKDQDDSSNK SPEKVTGKQP RQCKSIDAMV DVPTKVKTPG LVSVPSTIEE VALSLMMLYN 120 GEWKNDIEEK QKGKREMRQD NTINEDESKK ENNDNGDNDN DDEYTFYPAM AWAKIQTQMV 180 TRTKARAIAC DKGHQSDPML ENPEAIEAQL CECEFCPMVF KSRQTLHGLM KIHASSSSDY 240 AIPKHNLIDF NLPPPEGDDK IN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6PNV5 | 0.0 | A0A2R6PNV5_ACTCH; Zinc finger protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 5e-17 | C2H2-like zinc finger protein |