PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn024641
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 263aa    MW: 29526.3 Da    PI: 5.9273
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn024641genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06931123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+Cp+C+ksFs+   L  H+r H
  Achn024641  9 YPCPICSKSFSNGKALGGHMRAH 31
                99*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-4831IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.89E-8831No hitNo description
SMARTSM003550.0027931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.884936IPR007087Zinc finger, C2H2
PfamPF139121.9E-9932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.89E-8206233No hitNo description
SMARTSM0035549211233IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAFPSMERYP CPICSKSFSN GKALGGHMRA HLAFHPLPPK PQELEDLNKA NPSMRLRSRE  60
GKDQDDSSNK SPEKVTGKQP RQCKSIDAMV DVPTKVKTPG LVSVPSTIEE VALSLMMLYN  120
GEWKNDIEEK QKGKREMRQD NTINEDESKK ENNDNGDNDN DDEYTFYPAM AWAKIQTQMV  180
TRTKARAIAC DKGHQSDPML ENPEAIEAQL CECEFCPMVF KSRQTLHGLM KIHASSSSDY  240
AIPKHNLIDF NLPPPEGDDK IN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PNV50.0A0A2R6PNV5_ACTCH; Zinc finger protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.15e-17C2H2-like zinc finger protein