PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn024261

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 514aa MW: 56900.1 Da PI: 8.7125

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn024261	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Achn024261 66 FVCEICNKGFQRDQNLQLHWRGH 88 89******************988 PP
2	zf-C2H2	15.2	6.1e-05	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ + H++t+ Achn024261 142 WKCDKCSKKYAVQSDWRAHQKTC 164 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.0E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.74E-8	65	88	No hit	No description
SMART	SM00355	0.034	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.492	66	88	IPR007087	Zinc finger, C2H2
Pfam	PF12171	5.4E-5	66	88	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.74E-8	137	163	No hit	No description
SMART	SM00355	91	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MSTWTVLEYE MDLRPNYVES EFRAVNITFR LAHLFRIGYG YYPKWKDPNA EVVALSPKTL 60 MATNRFVCEI CNKGFQRDQN LQLHWRGHNL PWKLKQRTST EVKKRVYICP EASCLHHNPA 120 RALGDLTGIK NHYSRKHGEK KWKCDKCSKK YAVQSDWRAH QKTCGTREYK CDCGTIFSRR 180 DSFITHRAFC DALAEENNKV NQAGLMPNMG PNMHAQMTDR FMPINTSPNP SMGMSEFNNY 240 DPQNTLKSLP QEIVPMPFKP MNMTGGMFST TSGTLFGGPR SVSSSSSSSL QLSTSNVPSG 300 FNYLQDSKNG GQNSCSAHMS ATALLQKAAQ MGATASNNIN SPMMQKSFGS TMAGPYSATQ 360 QHSSSYEHFQ TPSNQSALVG ISGGGFTNPL NDMGMFGGMF MGGDQSQLGF MKSMDQHEDS 420 NSNSNSSSPV QGRASVGPSL MGPSRFVGHG GGGSDMMTVD FLGIGGPTHR NLHEQQQRLE 480 LEAMSGQRMQ VMNHFQEQLS QGETAMEKSM WDV*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MSTWTVLEYE MDLRPNYVES EFRAVNITFR LAHLFRIGYG YYPKWKDPNA EVVALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHWRGHNL PWKLKQRTST EVKKRVYICP EASCLHHNPA  120
RALGDLTGIK NHYSRKHGEK KWKCDKCSKK YAVQSDWRAH QKTCGTREYK CDCGTIFSRR  180
DSFITHRAFC DALAEENNKV NQAGLMPNMG PNMHAQMTDR FMPINTSPNP SMGMSEFNNY  240
DPQNTLKSLP QEIVPMPFKP MNMTGGMFST TSGTLFGGPR SVSSSSSSSL QLSTSNVPSG  300
FNYLQDSKNG GQNSCSAHMS ATALLQKAAQ MGATASNNIN SPMMQKSFGS TMAGPYSATQ  360
QHSSSYEHFQ TPSNQSALVG ISGGGFTNPL NDMGMFGGMF MGGDQSQLGF MKSMDQHEDS  420
NSNSNSSSPV QGRASVGPSL MGPSRFVGHG GGGSDMMTVD FLGIGGPTHR NLHEQQQRLE  480
LEAMSGQRMQ VMNHFQEQLS QGETAMEKSM WDV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-34	138	201	3	66	Zinc finger protein JACKDAW
5b3h_F	9e-34	138	201	3	66	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028085273.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9SCQ6	1e-102	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2R6PNX6	0.0	A0A2R6PNX6_ACTCH; Zinc finger protein like
STRING	VIT_07s0104g01620.t01	0.0	(Vitis vinifera)
STRING	EOX94991	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	9e-89	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]