PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn021921

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YB

Protein Properties

Length: 346aa MW: 38517.9 Da PI: 6.6055

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn021921	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	60.8	3e-19	2	73	14	85
NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++i+k++lP + ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al lGf +y e++ + Achn021921 2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNKEEKRTIAPEHVLKALEVLGFGEYSEEVYA 73 68****************************************************************998754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	4.8E-18	2	59	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	7.38E-26	2	98	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.5E-28	2	89	IPR009072	Histone-fold
Pfam	PF04759	3.0E-67	182	344	IPR006460	Protein of unknown function DUF617, plant
TIGRFAMs	TIGR01570	2.0E-61	182	345	IPR006460	Protein of unknown function DUF617, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE VCNKEEKRTI APEHVLKALE 60 VLGFGEYSEE VYAAYEQHKL ETMMKNNTFM AKSSEDLSSK RHFHWTTKIT NEEEQQSPTL 120 KSSNTAGDKK EETQKGPKPE QAASTSSQRR KLQAIAVSRL RSVLTAFRKN QSHSLLSLGP 180 QVVGTLFGHR HGHVHMAFQK DAASEPAFLI ELATPISGLV REMVSGLARI ALECDKEEGE 240 EEKAVGRPLL LEEPRWRTYC NGKKCGFAAR RECGPREWKV LKAVEPISMG AGVLPGNGDG 300 DGDGEIMYMR AKFERVVGSK DSEAFYMMNP DSNGAPELSI YLLRV*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLISSESNE VCNKEEKRTI APEHVLKALE  60
VLGFGEYSEE VYAAYEQHKL ETMMKNNTFM AKSSEDLSSK RHFHWTTKIT NEEEQQSPTL  120
KSSNTAGDKK EETQKGPKPE QAASTSSQRR KLQAIAVSRL RSVLTAFRKN QSHSLLSLGP  180
QVVGTLFGHR HGHVHMAFQK DAASEPAFLI ELATPISGLV REMVSGLARI ALECDKEEGE  240
EEKAVGRPLL LEEPRWRTYC NGKKCGFAAR RECGPREWKV LKAVEPISMG AGVLPGNGDG  300
DGDGEIMYMR AKFERVVGSK DSEAFYMMNP DSNGAPELSI YLLRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-24	1	79	21	98	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028069536.1	1e-127	protein MIZU-KUSSEI 1-like
TrEMBL	A0A2R6QI74	0.0	A0A2R6QI74_ACTCH; Protein MIZU-KUSSEI like
STRING	VIT_17s0000g04340.t01	1e-122	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08190.1	5e-52	nuclear factor Y, subunit B12