PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn021041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 291aa    MW: 32002.4 Da    PI: 5.6314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn021041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48e-16139184555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Achn021041 139 HNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 184
                 9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20131194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-19134194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-17139188No hitNo description
PfamPF000102.4E-13139184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MADLYGTNAR SSPFESEEIS SFLQNLLHNS FTSPASSSCP SSKDKHKQSV MVDSSIAFNF  60
SDPDRGFMAD ARECARNTFS EFCAVDSDGI TSSSKRKFPV ESDVIDFGSD CKKGPEASEA  120
PVNQAPSRSS KRGRAAEIHN LSEKRRRSRI NEKLKALQNL IPNSNKTDKA SMLDEAIEYL  180
KQLQLQVQML SMRNGVSLHP FYLPGSINLA QLSQAVISFD EGNEVLNSNS GDDTFSRNQE  240
ISVQAAFDLP NQTTPSNQPN LISPMTDIAN SETHLHWNHQ FKASMDPSIS *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080409.11e-139transcription factor SPATULA-like
TrEMBLA0A2R6Q0680.0A0A2R6Q068_ACTCH; Transcription factor SPATULA like
STRINGVIT_18s0001g10270.t014e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-40bHLH family protein