PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn020701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 376aa    MW: 42000.9 Da    PI: 6.2631
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn020701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.61e-2560141286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W ++e+++Li +rre++  ++++k++k+lWe++s+kmre+gf rs+++C++kw+nl k++kk ++++++++   s + + +++le
  Achn020701  60 WAHEETRCLIGFRREVDGLFNTSKSNKHLWEQISAKMREKGFDRSATMCTDKWRNLLKEFKKARHQDRSGA---SAKLSCYKELE 141
                 ********************************************************************984...55567788887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-450120IPR009057Homeodomain-like
PROSITE profilePS500908.01452116IPR017877Myb-like domain
CDDcd122035.62E-2858123No hitNo description
PfamPF138375.4E-1959143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYLSDKPRPI DFYKGGGGER DMVVEVSSVG DLPPHHLQIL GDSSGEDPEV KAPKKRAETW  60
AHEETRCLIG FRREVDGLFN TSKSNKHLWE QISAKMREKG FDRSATMCTD KWRNLLKEFK  120
KARHQDRSGA SAKLSCYKEL EELLRDRGKN GAYKSPTSSS KVELYIQFSD KGLEDGNIPF  180
GPVEASGRSS VNLERALDND GDPLAITAAD AVAGSGVPPW NWRETPGNGG ESHSPYGGRV  240
ITVKWGEHTR RIGIDGTADA IKEAIKSAFR LRTKRAFCLE DEDNVIRSLD RNMPLGNYNL  300
HLDEGISIKI CLYDESGHMA VQTEDKTLYT EDDFRDFLTR NGFSGLREIN GYRTFDNLDD  360
LRSGAMYQGV RLLGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A6e-4354139186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055162.10.0trihelix transcription factor GT-4-like
SwissprotQ9FX531e-168TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A2R6RZ330.0A0A2R6RZ33_ACTCH; Trihelix transcription factor GT-1 like
STRINGXP_010250844.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-170Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]