PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn019201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | YABBY | ||||||||
Protein Properties | Length: 312aa MW: 34987.7 Da PI: 8.1597 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 124.4 | 1.7e-38 | 149 | 213 | 106 | 170 |
YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e+pr+p ++ PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ hfgl Achn019201 149 LDELPRPPVINIAPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHTHFGL 213 6789999999*****************************************************97 PP | |||||||
2 | YABBY | 95.3 | 1.5e-29 | 254 | 308 | 105 | 159 |
YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + +e+pr+p ++ PekrqrvPsaynrfik+eiqrika+nPdishreafsaaakn Achn019201 254 RLDELPRPPVINIAPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 308 567999*999********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-35 | 155 | 213 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.23E-7 | 159 | 207 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.3E-4 | 162 | 207 | IPR009071 | High mobility group box domain |
Pfam | PF04690 | 7.9E-27 | 261 | 308 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.27E-5 | 265 | 306 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MRCHVPVDEL PMTCHKMVDM RTGQGTCSDG TKHFLVMDCG TTLCLGHLYG LGRTQHKSLA 60 SGDGGEDDFV EPFEGDSDLV EVFQLEDESV ERERIGLIDS MKKPKISLKQ RGVPVIRGGM 120 PEEIQNPNPN FLINQPNPSN FGLPTRGRLD ELPRPPVINI APEKRQRVPS AYNRFIKDEI 180 QRIKAGNPDI SHREAFSAAA KNWAHFPHTH FGLMPDQTVR RTSVRQQEEI QNPNPNFLIN 240 QPNPSNFGLP TRGRLDELPR PPVINIAPEK RQRVPSAYNR FIKDEIQRIK AGNPDISHRE 300 AFSAAAKNVC V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015582967.1 | 5e-57 | protein YABBY 4 | ||||
TrEMBL | A0A2R6PI65 | 3e-69 | A0A2R6PI65_ACTCH; Axial regulator YABBY like | ||||
STRING | XP_002532573.1 | 9e-56 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-37 | YABBY family protein |