PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn019201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family YABBY
Protein Properties Length: 312aa    MW: 34987.7 Da    PI: 8.1597
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn019201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY124.41.7e-38149213106170
       YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                  +e+pr+p ++  PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ hfgl
  Achn019201 149 LDELPRPPVINIAPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHTHFGL 213
                 6789999999*****************************************************97 PP
2YABBY95.31.5e-29254308105159
       YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                 + +e+pr+p ++  PekrqrvPsaynrfik+eiqrika+nPdishreafsaaakn
  Achn019201 254 RLDELPRPPVINIAPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 308
                 567999*999********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-35155213IPR006780YABBY protein
SuperFamilySSF470952.23E-7159207IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.3E-4162207IPR009071High mobility group box domain
PfamPF046907.9E-27261308IPR006780YABBY protein
SuperFamilySSF470953.27E-5265306IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRCHVPVDEL PMTCHKMVDM RTGQGTCSDG TKHFLVMDCG TTLCLGHLYG LGRTQHKSLA  60
SGDGGEDDFV EPFEGDSDLV EVFQLEDESV ERERIGLIDS MKKPKISLKQ RGVPVIRGGM  120
PEEIQNPNPN FLINQPNPSN FGLPTRGRLD ELPRPPVINI APEKRQRVPS AYNRFIKDEI  180
QRIKAGNPDI SHREAFSAAA KNWAHFPHTH FGLMPDQTVR RTSVRQQEEI QNPNPNFLIN  240
QPNPSNFGLP TRGRLDELPR PPVINIAPEK RQRVPSAYNR FIKDEIQRIK AGNPDISHRE  300
AFSAAAKNVC V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582967.15e-57protein YABBY 4
TrEMBLA0A2R6PI653e-69A0A2R6PI65_ACTCH; Axial regulator YABBY like
STRINGXP_002532573.19e-56(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-37YABBY family protein