PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn019011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 168aa MW: 18555.3 Da PI: 7.0007 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.3 | 7.4e-45 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG++g i+ lq+q++ql+ +la++++ Achn019011 6 PCASCKLLRRRCAKDCIFAPYFPSDDPQKFAMVHKVFGASNISKMLQELPIHQRADAVSSLVYEANARVRDPVYGCIGAISYLQNQVSQLQMQLAVAQA 104 7***********************************************************************************************998 PP DUF260 100 e 100 e Achn019011 105 E 105 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.984 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-44 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGGNSPCASC KLLRRRCAKD CIFAPYFPSD DPQKFAMVHK VFGASNISKM LQELPIHQRA 60 DAVSSLVYEA NARVRDPVYG CIGAISYLQN QVSQLQMQLA VAQAEILCIQ MQQEPTLPAT 120 PQLVDHPDDK SFFLPHPYLN FASSSSSVIQ EYSLKRESLF GHDMVSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-50 | 2 | 116 | 7 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-50 | 2 | 116 | 7 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022743766.1 | 3e-98 | LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 9e-76 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2R6PLL9 | 1e-108 | A0A2R6PLL9_ACTCH; LOB domain-containing protein | ||||
STRING | XP_006486261.1 | 3e-97 | (Citrus sinensis) | ||||
STRING | XP_006435806.1 | 3e-97 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 4e-78 | LBD family protein |
Publications ? help Back to Top | |||
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