PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn016471

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 506aa MW: 54904.8 Da PI: 9.1999

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn016471	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Achn016471 79 FICEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.5	0.00045	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Achn016471 156 WKCEKCSKRYAVQSDWKAHSKIC 178 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.29E-7	78	101	No hit	No description
SMART	SM00355	0.022	79	101	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	6.1E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	79	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	40	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.3E-5	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.29E-7	151	176	No hit	No description
SMART	SM00355	130	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MMMNGVMLDD NMSNLTSASN EASISSSNRN EVMGGGNLYT QAPNQPPPPK KKRNLPGNPD 60 PEAEVVTLSP KTLMTKNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKDVMVRKKV 120 YVCPEAGCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT 180 KEYRCDCGTL FSRRDSFITH RAFCDALVEE TTRSSNLLTQ NPLFSSQTTP HFSLQNNFPV 240 ALKTEVQDQT QSFIHLPPWL AHQQNPVDLP NQLFPTRFEN PNPSPHMSAT ALLQKAAQMG 300 ATMSKNGLPT ASETVLIRPH QLAHMGSGSG SGSGSGLGFA SCEDMGNGFL LGNVRAGVGV 360 GVGVGVGGNF SVASGCMKQV GATMMGGGGG GSLPSVSGFD GSSSSASPFE EALHGMLMNP 420 KMDPFLETTH LRRSNEGGDP FLETTHLRRS NEGGGGNDGL TRDFLGLRGF SHRGIPNLAW 480 FDQINNTSSS STYGQQNQSQ TPWQG*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MMMNGVMLDD NMSNLTSASN EASISSSNRN EVMGGGNLYT QAPNQPPPPK KKRNLPGNPD  60
PEAEVVTLSP KTLMTKNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKDVMVRKKV  120
YVCPEAGCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
KEYRCDCGTL FSRRDSFITH RAFCDALVEE TTRSSNLLTQ NPLFSSQTTP HFSLQNNFPV  240
ALKTEVQDQT QSFIHLPPWL AHQQNPVDLP NQLFPTRFEN PNPSPHMSAT ALLQKAAQMG  300
ATMSKNGLPT ASETVLIRPH QLAHMGSGSG SGSGSGLGFA SCEDMGNGFL LGNVRAGVGV  360
GVGVGVGGNF SVASGCMKQV GATMMGGGGG GSLPSVSGFD GSSSSASPFE EALHGMLMNP  420
KMDPFLETTH LRRSNEGGDP FLETTHLRRS NEGGGGNDGL TRDFLGLRGF SHRGIPNLAW  480
FDQINNTSSS STYGQQNQSQ TPWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	152	221	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-35	152	221	3	72	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	118	KQRNKDVMVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122015.1	0.0	protein indeterminate-domain 7-like
Refseq	XP_028122016.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-120	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2R6PI52	0.0	A0A2R6PI52_ACTCH; Protein indeterminate-domain like
STRING	cassava4.1_005370m	1e-171	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-108	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]