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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn015051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 262aa MW: 29416.8 Da PI: 8.1771 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.9 | 8.7e-32 | 68 | 123 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++r++eClkNhAas+Gg+++DGCgEfmps g++gt++alkCaAC+CHRnFHRre+++ Achn015051 68 GTRFRECLKNHAASVGGNVLDGCGEFMPS-GDDGTMEALKCAACNCHRNFHRREPDH 123 579*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-21 | 69 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.9E-29 | 69 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.9E-30 | 70 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.329 | 71 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.63E-18 | 188 | 251 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-30 | 190 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.1E-28 | 191 | 248 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEMKGQQGSL GYNNEPIFRE TSETLDRHHH LLEQNSPTTT RRPNQDQFNG SGGERVAQKS 60 SGSSLISGTR FRECLKNHAA SVGGNVLDGC GEFMPSGDDG TMEALKCAAC NCHRNFHRRE 120 PDHGSEFALH LPPPLPSLRQ HQRLWTPLVS PVKMAFGGTD SSSEDFHFNT VHSNEAAVRG 180 APPPPPFVLS KKRFRTKFTQ DQKEKMLEYA EKVGWRIPRE DDAEVQRFCA EVGVKRRVLK 240 VWMHNNKNSS AKKQPHEEEE S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-25 | 190 | 249 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115524.1 | 5e-93 | zinc-finger homeodomain protein 5-like | ||||
Swissprot | Q9M9S0 | 3e-58 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2R6PZU0 | 0.0 | A0A2R6PZU0_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | EOY14784 | 2e-79 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 1e-60 | homeobox protein 31 |