PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn014121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 597aa    MW: 69046.4 Da    PI: 6.4137
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn014121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.67.3e-2268159190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  Achn014121  68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 159
                 59********************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1968159IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.348467503IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-7475501IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4478505IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MVSILSKNVW MRRQQCPCGD WKCFVTYEGD AEETAAASQS IKNDSPSAEA MVAPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKREN  240
DTTELLESCR ALKEGDQYFV YDVTVDENDK VENIAWSYGD SVHMYDMFGD VVYFDTTYRS  300
ITYGMLFGAW LGIDNHENSE DFEFRWNQMV GQYGISSDKH IALLFSLRTS WALPYIKGFF  360
LARMATTAYS KSVDAFLKGV FSAQTCLRSV FEQVRISSTL RIQAREEMQY VHIRTCLPIE  420
EHARSILTPF AFNALQHELV LAMQYASSQM TDGSYIVRHF KKMDGEYLVI WIPEQEQIHC  480
SCKEFECSGI LCRHALRVLL IKNYFQLPEK YFPCRWQKES SLVPYDDQDD QNGTDEWFQE  540
FNSLTGTLFT ESSITKERSD YVHRELTKEL KRLINVVRNM PASDAVAMDL TRSPTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028943522.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X2
SwissprotQ9LKR41e-150FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A251PH680.0A0A251PH68_PRUPE; Uncharacterized protein
STRINGPOPTR_0016s00900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-152FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]