PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn014121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 597aa MW: 69046.4 Da PI: 6.4137 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.6 | 7.3e-22 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Achn014121 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 159 59********************8888.*******************************************99867789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-19 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.348 | 467 | 503 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-7 | 475 | 501 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.5E-4 | 478 | 505 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MVSILSKNVW MRRQQCPCGD WKCFVTYEGD AEETAAASQS IKNDSPSAEA MVAPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKREN 240 DTTELLESCR ALKEGDQYFV YDVTVDENDK VENIAWSYGD SVHMYDMFGD VVYFDTTYRS 300 ITYGMLFGAW LGIDNHENSE DFEFRWNQMV GQYGISSDKH IALLFSLRTS WALPYIKGFF 360 LARMATTAYS KSVDAFLKGV FSAQTCLRSV FEQVRISSTL RIQAREEMQY VHIRTCLPIE 420 EHARSILTPF AFNALQHELV LAMQYASSQM TDGSYIVRHF KKMDGEYLVI WIPEQEQIHC 480 SCKEFECSGI LCRHALRVLL IKNYFQLPEK YFPCRWQKES SLVPYDDQDD QNGTDEWFQE 540 FNSLTGTLFT ESSITKERSD YVHRELTKEL KRLINVVRNM PASDAVAMDL TRSPTG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028943522.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
Swissprot | Q9LKR4 | 1e-150 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A251PH68 | 0.0 | A0A251PH68_PRUPE; Uncharacterized protein | ||||
STRING | POPTR_0016s00900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7532 | 19 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-152 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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