PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn013141
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 286aa    MW: 31438 Da    PI: 5.9511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn013141genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.24.6e-16203249455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Achn013141 203 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 249
                 6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-19196260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-19197264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-17202253No hitNo description
PfamPF000101.6E-13203249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVSFKSSDCA INMTHLMSQC GGGPANELDQ RQHHGCEPKK EIDADNVVVS LRKTTCTHAS  60
GSAQRREDMY KTAYASSPSP PETDDISLFL HQFLLRSPSL PSNSDSPMVH MCPTSRTLPQ  120
NPHRPIQSSL LSGFEISAAE SSSAAIFGGY FQANASSSAG TIDNDPDEYD CESEEGFEAL  180
VEEGPLKPVP PKNSSKRGRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN KTDKASMLDE  240
AIEYLKQLQL QVQVKEICNE DMLHHQQLNV DDHSRTNSLG VNITN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0042352e-53FJ004235.1 Catharanthus roseus bHLH transcription factor MYC5 (MYC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093953.19e-67transcription factor SPATULA-like isoform X1
RefseqXP_028093955.13e-67transcription factor SPATULA-like isoform X3
TrEMBLA0A2R6R5K01e-130A0A2R6R5K0_ACTCH; Transcription factor SPATULA like
STRINGVIT_07s0031g00450.t013e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-30bHLH family protein