PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn012651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 105aa MW: 12403.1 Da PI: 10.2247 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.3 | 1.4e-09 | 11 | 104 | 1 | 76 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkw 76 k+Y++Y+++ F +r ++s+k +r++ +t+ fvC kegk ++++k +k++r+ ++ + g +a+l++k++k + kw Achn012651 11 KYYEDYGRQNDFWIRSRTSSKGqNRSNDVTSVLFVCAKEGKYIPKTEKdgvegndervkddkvlPKKRKRSCSTAKFGYNAHLRIKRDKwSLKW 104 69*************9888776477888*************999999999***********99888889999999***********99766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-6 | 11 | 103 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MFFEIIEEAR KYYEDYGRQN DFWIRSRTSS KGQNRSNDVT SVLFVCAKEG KYIPKTEKDG 60 VEGNDERVKD DKVLPKKRKR SCSTAKFGYN AHLRIKRDKW SLKW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 80 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289266.1 | 5e-29 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2R6R5G6 | 9e-71 | A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like | ||||
STRING | XP_004289266.1 | 2e-28 | (Fragaria vesca) |