PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn008041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 95aa MW: 10957.8 Da PI: 10.7852 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.9 | 4.7e-05 | 38 | 77 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A Ik Lq Achn008041 38 RRSQKLSDRITALQKLVSPY-----GKTDTASVLQEALVSIKALQ 77 7999**************99.....9****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.705 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-7 | 38 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-8 | 38 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MREQTKSKKK AAYFQEQWHS QVKEDLSKMI QRQRVPVRRS QKLSDRITAL QKLVSPYGKT 60 DTASVLQEAL VSIKALQDQI QVTHPNHLKL VIYI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024042127.1 | 2e-24 | transcription factor bHLH133-like isoform X1 | ||||
Refseq | XP_024042129.1 | 1e-24 | transcription factor bHLH133-like isoform X3 | ||||
Refseq | XP_024957129.1 | 2e-24 | transcription factor bHLH133-like isoform X1 | ||||
Refseq | XP_024957131.1 | 1e-24 | transcription factor bHLH133-like isoform X4 | ||||
TrEMBL | A0A2H5NYP8 | 9e-23 | A0A2H5NYP8_CITUN; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A3S3MBN5 | 8e-23 | A0A3S3MBN5_9MAGN; Transcription factor bHLH123 isoform X1 | ||||
STRING | XP_006486499.1 | 9e-24 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15444 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05170.1 | 3e-15 | bHLH family protein |