PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn007121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 827aa    MW: 90878.9 Da    PI: 6.504
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn007121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-191876357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Achn007121 18 KYVRYTPEQVEALERVYHECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76
                5679*****************************************************97 PP
2START181.35.5e-571623702205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++   v+e+l+d++ W ++++++++l+v+s+g  g+++l + +l
  Achn007121 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPN-RVAEILKDRPSWYRDCRAVDVLNVLSTGngGTIELLYLQL 259
                 789*******************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  l +g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++  ++
  Achn007121 260 YAPTTLSPaRDFWLLRYTSVLDDGSHVVCERSLNNTQNGPSmppVQHFVRAERLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQ 358
                 ***************************************9988899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 +t++a+l+++++
  Achn007121 359 RTTMAALRQLRQ 370
                 ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581377IPR001356Homeobox domain
SMARTSM003897.2E-161581IPR001356Homeobox domain
SuperFamilySSF466894.71E-171780IPR009057Homeodomain-like
CDDcd000865.19E-171878No hitNo description
PfamPF000462.1E-161976IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-192076IPR009057Homeodomain-like
CDDcd146865.27E-670109No hitNo description
PROSITE profilePS5084826.025152380IPR002913START domain
CDDcd088757.67E-79156371No hitNo description
SMARTSM002341.6E-44161371IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-22161367IPR023393START-like domain
SuperFamilySSF559616.87E-37161371No hitNo description
PfamPF018522.8E-54162370IPR002913START domain
PfamPF086702.4E-50683825IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MAVTSACKED KIGMDNGKYV RYTPEQVEAL ERVYHECPKP SSLRRQQLIR ECPILCNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQGVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QTQNAKIATT DTSCESVVTS GQNHLTPQHP PRDASPSGLL SIAEETLTEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCTGVAARA CGLVGLEPNR VAEILKDRPS WYRDCRAVDV  240
LNVLSTGNGG TIELLYLQLY APTTLSPARD FWLLRYTSVL DDGSHVVCER SLNNTQNGPS  300
MPPVQHFVRA ERLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLAQRT  360
TMAALRQLRQ ISQEVSQPTV TGWGRRPAAL RALSQRLSKG FNEAVNGFTD EGWSMIESDG  420
IDDVTLLVKS SPGKMMSANP YANGFPSISN AVLCAKASML LQNVPPSVLL RFLREHRSEW  480
ADSGIDAYAA AAVKADPCGF PGSRGGIFCG QQFMEVIKIE NFGHYRDDMI IPGDIFLLQL  540
CSGVDENAIG TCAELIFAPI DTSFSDDAPL LPSGFRIIPL DSGTDASSPN RTLDLTSALE  600
VGPTGNRNGG DYSGRGGNGK SVMTLAFQFA FEIHLQENVA AMARQYVRSI IASVQRVALA  660
LSPTRFGPHA GLLAPPGTPE ARTLARWIYL SYRCSLGADL LKPVNEGSES ILKTLWHHSE  720
AVMCCSLKEL PVFTFANQAG LDMLETTLVA LQDITLEKIL DDHGRKTVCS ELPQIMQQGF  780
ACLQGGICLS SMGRPVSYER AVAWKVLNDE ETAHCICFMF INWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056558.10.0homeobox-leucine zipper protein ATHB-15 isoform X1
RefseqXP_028056559.10.0homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2R6PHD70.0A0A2R6PHD7_ACTCH; Homeobox-leucine zipper protein like
STRINGEOY297710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]