PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn005241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 19925.9 Da PI: 7.7954 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.1 | 7.1e-39 | 14 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal...........peeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l+ + p ++r da+ss+vyeA+ar+rdPvyG+vg i++lq+q++ Achn005241 14 PCAACKLLRRRCAEDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQLVvivgrenvqelPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQHQID 112 7********************************************97555555544455589999********************************** PP DUF260 89 qlkaelallkee 100 l+++la++++e Achn005241 113 VLQTQLAMAQAE 124 *******99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.283 | 13 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-40 | 14 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKEINGRKQG VASPCAACKL LRRRCAEDCV FAPYFPADEP QKFASVHKVF GASNVNKMLQ 60 LVVIVGRENV QELPVHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQHQ IDVLQTQLAM 120 AQAEVVQLRM RQFSTMSNRP TTTKSPENGS PPPLPISPTK SSFNMDMVVD EASIEESLWS 180 C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-46 | 10 | 127 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-46 | 10 | 127 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364248.1 | 4e-92 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 2e-69 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A2R6PR84 | 1e-121 | A0A2R6PR84_ACTCH; LOB domain-containing protein | ||||
STRING | PGSC0003DMT400022286 | 1e-91 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 8e-72 | LOB domain-containing protein 4 |