PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn003161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YA | ||||||||
Protein Properties | Length: 245aa MW: 27392.9 Da PI: 10.5248 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 95.1 | 7.9e-30 | 151 | 211 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk....pylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e e+k+ +ksrk pylheSRh hAl+R+Rg+gGrF Achn003161 151 EEPVFVNAKQYHGILRRRQSRAKAELENKM-IKSRKlnmqPYLHESRHLHALKRARGCGGRF 211 69***************************7.555543333*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.0E-33 | 149 | 214 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.044 | 150 | 214 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.0E-25 | 152 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.0E-22 | 153 | 175 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 155 | 175 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 9.0E-22 | 188 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MRQTKRKVNS RKGKQKQNRR QQFLLATENK AQIAQKRFAP EISLQDNSEA DEQQKHSDTQ 60 VQSSSPVTGT SHPATTTPSV QYMMPPQLGQ GNAMGQAAYP YPDPYYRSIF APAPYDAQPY 120 PVQPYPPQPM VHVQLMGIQQ AGVPLPSDAV EEPVFVNAKQ YHGILRRRQS RAKAELENKM 180 IKSRKLNMQP YLHESRHLHA LKRARGCGGR FTNSKKNENQ QKEAASGVKS QANKNDLAPS 240 ESSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-18 | 150 | 219 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010655736.1 | 1e-105 | PREDICTED: nuclear transcription factor Y subunit A-7 | ||||
Swissprot | Q84JP1 | 9e-61 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2R6QAL6 | 1e-146 | A0A2R6QAL6_ACTCH; Nuclear transcription factor Y subunit A-7 like | ||||
STRING | VIT_10s0003g04650.t01 | 1e-104 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6650 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 4e-59 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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