PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn002281 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | FAR1 | ||||||||
Protein Properties | Length: 167aa MW: 18824.4 Da PI: 7.8515 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82 | 1e-25 | 29 | 117 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn Y+ +GFs+r+ +s+ks+++g + r+fvCsk+g+r ++k+ +++r+etrt+C+a++ +++++ ++kw+v +e++HnH+l Achn002281 29 EFYNVYGIVMGFSIRICYSTKSQKDGVLIGRKFVCSKQGTRGKDKRC-LVVEHPRKETRTKCDANMSISLNReTSKWVVVGFEEKHNHSL 117 6******************************************9998.88899******************99***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-22 | 29 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MNVKENEHFI EDYTPCLQKE FETEDAAYEF YNVYGIVMGF SIRICYSTKS QKDGVLIGRK 60 FVCSKQGTRG KDKRCLVVEH PRKETRTKCD ANMSISLNRE TSKWVVVGFE EKHNHSLHLP 120 ECAHMMKSQR TIYEAQAINV DIAADSGLSL KASHDLLSVQ AGGRSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028051873.1 | 1e-65 | protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-22 | FAR1 family protein |