PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn001941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 266aa    MW: 31412.7 Da    PI: 9.4859
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn001941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.54.3e-2447128186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ qe+++ + +r e++ ++ ++k++k lWe ++ km+++g++rs +qCk+kw+nl +ryk ++++e ++    ++++py+++++
  Achn001941  47 QWSVQETRDFLMIRVELHPTFMETKRNKLLWEVIATKMKDKGYNRSTEQCKCKWKNLVTRYKGCETMEPEG----RQQFPYYNEMQ 128
                 7********************************************************************97....5689******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.31E-2346111No hitNo description
PfamPF138372.0E-2047130No hitNo description
PROSITE profilePS500907.07348104IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNEMRNLVAA LHTKYEQITE KKRSNLTVAG HHHHISANVD AGDRFPQWSV QETRDFLMIR  60
VELHPTFMET KRNKLLWEVI ATKMKDKGYN RSTEQCKCKW KNLVTRYKGC ETMEPEGRQQ  120
FPYYNEMQAI FAARMQRMLW MEAEGGGASG SKKKGVALSS DDEDDNEESD REKGGSGTQK  180
KRKVALKSAS RGNINSLKVV LEEFRKQQMQ MEMEWIKTYE AREEERRMKE MEWRQAMEAL  240
ENERVMMDRR WRERERRAKE DEKGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250357.13e-97PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804501e-57TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A2R6QK831e-146A0A2R6QK83_ACTCH; Trihelix transcription factor GT-3b like
STRINGXP_009799172.12e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.18e-53Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]