PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn000061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 270aa    MW: 30999 Da    PI: 6.7819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn000061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.43.9e-18204238135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+C t  Tp+WR gpdg+ tLCnaCG++y++ +l
  Achn000061 204 CSHCETEVTPQWRIGPDGPNTLCNACGVRYKSGRL 238
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.4E-17198252IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.479198234IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-14198235IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.09E-13200260No hitNo description
CDDcd002021.61E-15203254No hitNo description
PfamPF003206.0E-16204238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGPVDGKSSF YSPKHSSDDI NYLLEFSYDD YRCMDLLSIF PESETTPSKY FVSPVIKTED  60
EEPVIKKEDE SILLTTLIKE EKEEEDILST VSESEYLNDF LTPVISPLIK EKSGLSKTDD  120
VVSSIFFRDV ISPTFMKDSS LPVTVPEQQV HDDNKRKEQV SEYNNDLSLP LSNKKARRSN  180
NRHPRVFLSF PETFEKAKRR RRKCSHCETE VTPQWRIGPD GPNTLCNACG VRYKSGRLLP  240
EYRPAASPSF DIMKHSNFHR TIIKRRSCK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202KRRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-31GATA transcription factor 12