PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aan021163

Organism

Artemisia annua

Taxonomic ID

35608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia

Family

MYB_related

Protein Properties

Length: 289aa MW: 31594.4 Da PI: 6.5175

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Aan#S55158910	PU_unref	Unigene	View CDS
PUT-183a-Artemisia_annua-64803	PU_unref	plantGDB	View CDS
PUT-183a-Artemisia_annua-64804	PU_unref	plantGDB	View CDS
PUT-183a-Artemisia_annua-64805	PU_ref	plantGDB	View CDS
PUT-183a-Artemisia_annua-64806	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	9.4e-14	87	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Aan021163 87 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 131 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.406	80	136	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-16	82	137	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.6E-17	83	134	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-10	84	134	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-10	86	131	IPR009057	Homeodomain-like
CDD	cd00167	5.43E-9	87	132	No hit	No description
Pfam	PF00249	5.5E-11	87	131	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTSSDESSNE IMLFGVRVKV DPMRKSVSMN DLSHYVHLQT PPLTNAVDDN GGGYVSADDV 60 IVPDHHRSNG SAGGGGGGAR ERKRGVPWTE DEHKLFLLGL QKVGKGDWRG ISRNFVKTRT 120 PTQVASHAQK YFLRRSNLNR RRRRSSLFDM TTDSVGAIPM EEQVSEDNTD KAASPQISPL 180 SGFPMATFPA TVSPVPSQVP VENQMETVTF SNYDQINAAP ALPVYPIALL PTPDTSTMAD 240 LNMIQKHEMD SLSLSLNLSL SYDHNNRMNT PAYQAMPSFN SGDGLISVG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Aan.8015	0.0	trichome

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024970440.1	1e-100	transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-63	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2U1P1H1	1e-166	A0A2U1P1H1_ARTAN; Homeodomain-like protein
STRING	EMJ10609	4e-80	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	3e-47	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]