PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan021080
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family MYB
Protein Properties Length: 351aa    MW: 38247.8 Da    PI: 7.0209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41964242PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-87382PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-184388147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd +l d+v ++G ++W++Iar ++ gR++k+c++rw + 
        Aan021080 43 RGPWSQEEDVILGDLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 88
                     89******************************.***********985 PP
2Myb_DNA-binding51.13.1e-1695139147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T  Ed ++v+a++++G++ W+ Ia+ +  gRt++ +k++w++ 
        Aan021080  95 RKPFTDAEDRIIVEAHAKYGNK-WAIIAKLLR-GRTDNAIKNHWNST 139
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.0353893IPR017930Myb domain
SuperFamilySSF466894.23E-3040136IPR009057Homeodomain-like
SMARTSM007174.8E-144291IPR001005SANT/Myb domain
PfamPF002492.7E-164388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-244496IPR009057Homeodomain-like
CDDcd001678.21E-144587No hitNo description
SMARTSM007172.3E-1594142IPR001005SANT/Myb domain
PfamPF002493.3E-1495139IPR001005SANT/Myb domain
PROSITE profilePS5129421.66695144IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2397145IPR009057Homeodomain-like
CDDcd001674.40E-1297140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
XMNNNNNNNS SPMVEEMNTN TITVTDSSPE SDVAVGEKKS KVRGPWSQEE DVILGDLVSK  60
FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PALERKPFTD AEDRIIVEAH AKYGNKWAII  120
AKLLRGRTDN AIKNHWNSTL RKKLIRPMCM FPSGTQINTN INYNHHLDTP TKALSEDTLS  180
NENIDQSKPS ELQDVTGMEV SNYYVSVDPS LTHQTLFRPT PHVGAFSVCA SPNGIQNGES  240
RAVHSTPGPL IEACKPESIG CKFLKGFSAE CVIPSRCGHG CCSGSGHGSK SQTSLLGPDF  300
VDYEELAPFS NKELATIAAD LNSIAWIKSG LEKPGATQPQ SHIALPVEGL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-38421443105C-Myb DNA-Binding Domain
1msf_C5e-38421443105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024968214.11e-138transcription factor MYB1
TrEMBLA0A2U1PSB80.0A0A2U1PSB8_ARTAN; Uncharacterized protein
STRINGVIT_13s0019g03200.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-89myb domain protein 109