PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aan020624
Organism
Artemisia annua
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
Family C2H2
Protein Properties Length: 453aa    MW: 50373.8 Da    PI: 8.4913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Aan#S41954569PU_unrefUnigeneView CDS
gnl|UG|Aan#S55013471PU_unrefUnigeneView CDS
PUT-183a-Artemisia_annua-538160996PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-054668123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Aan020624 46 FVCEICSKGFQRDQNLQLHRRGH 68
               89*******************88 PP
2zf-C2H2120.00062123145123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H + +
  Aan020624 123 WKCEKCSKKYAVQSDWKAHSKIC 145
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.81E-74568No hitNo description
Gene3DG3DSA:3.30.160.605.3E-54568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8874668IPR007087Zinc finger, C2H2
SMARTSM003550.0364668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM003559488118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4110144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.81E-7118143No hitNo description
SMARTSM00355140123143IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDATNTNPNP NPTNSAKRKR NLAGNPDPDA EVIALSPKSL MATNRFVCEI CSKGFQRDQN  60
LQLHRRGHNL PWKLKQRNKN EIVRKKVYIC PEVNCVHHDA SRALGDLTGV KKHFSRKHGE  120
KKWKCEKCSK KYAVQSDWKA HSKICGTREY KCDCGTIFSR KDSFITHRAF CDALSQENSR  180
RGLFPVIQTT TNLNFNSHLM MLNDGGRIMN PRFPGMFGGC GGLEMNGLDG NGMKPRLPIW  240
LHQHTENPLE NSTTNSSLLG STSSNNNNSE ILSPEMVQWL NRSHQTVENY TPQGLPLKEE  300
VDNSEWRFQE NISQWSTLPA GLPTTTKSIG CPNPQMSATA LLHKASQMGS TRSTNSSGYG  360
FMSTSELSGL TSLNQTGSNS VSEAENLSGG MMNGDGLIMM MMMEDLKQKT CIDSNDGNLT  420
RDFLGVEGNE QQELIKFTCS MNDKSSMCSN GSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35119180364Zinc finger protein JACKDAW
5b3h_F7e-35119180364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17485KQRNKNEIVRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024968304.10.0protein indeterminate-domain 9-like isoform X1
TrEMBLA0A2U1LUS10.0A0A2U1LUS1_ARTAN; Zinc finger, C2H2
STRINGXP_009789501.11e-136(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.14e-98C2H2-like zinc finger protein