PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan020576 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | MYB_related | ||||||||||||
Protein Properties | Length: 203aa MW: 23042.8 Da PI: 7.0767 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4e-07 | 104 | 153 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+ lG g+W+ + + ++Rt ++k++w ++ Aan020576 104 RRPFSVSEVEALVEAVETLGAGRWRDVKMRSFddaNHRTYVDLKDKWKTL 153 678999********************9655556**************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.257 | 99 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-7 | 103 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-10 | 104 | 154 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.40E-18 | 105 | 155 | No hit | No description |
SuperFamily | SSF46689 | 1.64E-15 | 105 | 186 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
QKETPLLLPC NTQQDLSRSP SSPITDGEFS NSSPDNSHPV TTLDNYMEKN QGNTTFPAEV 60 TTEEQVADSK ALVLVPERDA EVLSMVPLSE KPPKRFEYSQ RRTRRPFSVS EVEALVEAVE 120 TLGAGRWRDV KMRSFDDANH RTYVDLKDKW KTLVHTASIA PQQRRGEPVP QNLLDRVLAA 180 HSYWSQHQSK QNMKQQKTLV APM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 9e-60 | 87 | 201 | 1 | 114 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and roots. {ECO:0000269|PubMed:11513850, ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:11513850, ECO:0000269|PubMed:17272298}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:12909688}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024991495.1 | 1e-102 | telomere repeat-binding protein 4-like isoform X6 | ||||
Swissprot | Q9FFY9 | 9e-64 | TRP4_ARATH; Telomere repeat-binding protein 4 | ||||
TrEMBL | A0A2U1P981 | 1e-144 | A0A2U1P981_ARTAN; Homeodomain-like protein | ||||
STRING | POPTR_0010s20990.1 | 1e-75 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07540.1 | 5e-47 | TRF-like 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|