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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan020131 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | LBD | ||||||||||||
Protein Properties | Length: 143aa MW: 15506.4 Da PI: 5.4994 | ||||||||||||
Description | LBD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 61.1 | 3e-19 | 3 | 59 | 44 | 100 |
DUF260 44 kllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++++pe++r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ael+++++e Aan020131 3 MIIQEVPENQRADAANSLVYEANIRLRDPVYGCMGAISALQHQVQSLQAELNAVRAE 59 6899*************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.687 | 1 | 60 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-17 | 3 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MVMIIQEVPE NQRADAANSL VYEANIRLRD PVYGCMGAIS ALQHQVQSLQ AELNAVRAEI 60 LRYKYSEPQS DHNSIPSTHH LPLFSTGVVP VTTQALPPPP STTLSPPPPP PPPPPPRASS 120 SSSMYTPPSD YSTITNDNVS YFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-19 | 1 | 67 | 52 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-19 | 1 | 67 | 52 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023736121.1 | 2e-58 | LOB domain-containing protein 15 | ||||
TrEMBL | A0A2J6KAE1 | 4e-57 | A0A2J6KAE1_LACSA; Uncharacterized protein | ||||
STRING | VIT_13s0067g02380.t01 | 3e-44 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-30 | LOB domain-containing protein 13 |