PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Aan019954 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
|
||||||||||||
Family | MYB_related | ||||||||||||
Protein Properties | Length: 158aa MW: 17689.8 Da PI: 10.5553 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.7 | 5.3e-13 | 81 | 125 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ + s+ qky Aan019954 81 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTKVASHAQKY 125 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.289 | 74 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.13E-16 | 76 | 131 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-17 | 77 | 128 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.0E-8 | 78 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-10 | 80 | 125 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-8 | 81 | 126 | No hit | No description |
Pfam | PF00249 | 3.4E-10 | 81 | 125 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence Send to blast |
MSSCDGGSNE IMLFGVRVKI DPMRKSVSMN NLSQYEQPAP LLANDGSKAD VVVSADNGYA 60 SADDVVRHQA NGGRERKRGV PWTEDEHKLF LLGLQKVGKG DWRGISRNFV KTRTPTKVAS 120 HAQKYFLRRS NLNRRRCRSS LFDMTTDSVA PMPIDTRX |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023730192.1 | 2e-70 | transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 2e-66 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2U1N872 | 1e-109 | A0A2U1N872_ARTAN; Homeodomain-like protein | ||||
STRING | XP_009802855.1 | 3e-68 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G74840.2 | 4e-57 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|